How to perform domain enrichment on the peptide level ?

Hello, everyone!

I'm asking for any R package for domain enrichment analysis on the peptide level. Has anyone performed the similar analysis? I would thank you so much if you'd like to help me ！

domain-enrichment-analysis

• 482 views • link

updated 4.0 years ago by Ram 4.5K • | written 4.1 years ago by 16622080827 0

0 answers

No answers yet.

More posts like this

Best approaches to identify pathways uniquely affected by different drugs?
written 3 months ago by fnepo 4

Hello everyone, I am working with human cell data treated with several different drugs. My main goal is to understand how these drugs affect the …
Gene Ontology Enrichment with LOC gene IDs in Common Carp (Cyprinus carpio)
written 1.0 years ago by Naveen 0

hello everyone, I'm working on a transcriptome analysis of common carp (Cyprinus carpio) and have a question regarding Gene Ontology (GO) enrichment. After running DESeq2, …
How to Obtain a GMT File for Pathway Enrichment Analysis in Gallus gallus Metabolomics Data?
written 2.2 years ago by DareDevil 448

Hello everyone, I am currently working on metabolomics data for Gallus gallus and I am interested in performing pathway enrichment analysis. I would like to …
Clusterprofiler with M. tuberculosis genome
written 2.2 years ago by Maurice 0

Hi everyone, I'm trying to perform GO and KEGG pathway enrichment using cluster profiler with R studio on the *M. tuberculosis* genome but I'm struggling …
KEGG pathway enrichment analysis in Zea mays with R
written 2.3 years ago by letizia.ottaviani 0

Hello everybody, I'm trying to perform KEGG enrichment analysis with my list of DEG from DESeq2 in R. I'm trying to use cluster profiler but …
gene network analysis
written 6.0 years ago by adR 13

Hi Dears, I want to study gene network analysis considering two independent KEGG enrichment results( two different tissues). So what I want to do is …
"old" microarray probe IDs conversion to genes
written 6.7 years ago by irene768 0

Hello everyone, I am a total beginner in microarray analysis. I have to analyze an unpublished, old data set. The experiment was performed using Unigeneset …
How to make differential expression analysis with normalized data?
written 7.0 years ago by LuisNagano 10

Hello, could anyone help me out? Is there any R package that runs differential expression analysis or statistical test like generating log2FC and adj-p values …
Extracting gene symbols from gene assignments in exon array data
written 7.1 years ago by Kim 2

Hello everyone I'm working on gene expression data from a human exon array. I want to have a column of gene symbols but the only …
Package in R to determine which factor values are overrepresented within a particular factor of int…
written 9.9 years ago by IOM 0

Hi, Thanks for reading. I have performed some clustering using copy number data from SNP arrays. I would like to know if those clusters are …