Obtaining OMA and HOG IDs
Given a list of gene IDs, how does one obtain the corresponding OMA and HOG IDs?
In anticipation of suggestions, many thanks in advance
George
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Adrian Altenhoff
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gtzotzos •
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gtzotzos •
1 answer
Hi George,
the best is to use the REST API. You can send a json encoded list of protein IDs of interest using your favorite tool. a generic example with curl is the following:
curl --header "Content-Type: application/json" --request POST --data '{"ids": ["P53_HUMAN","P12345"]}' https://omabrowser.org/api/protein/bulk_retrieve/
For python, we also provide the omadb client: https://github.com/DessimozLab/pyomadb for more information about it. I hope this helps.
Adrian
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