How export HOG viewer tree with orthologs in OMA
Hi everybody,
Do you know how I can export HOG viewer tree with orthologs in OMA? Using the web interface?
Thanks,
Alejandro
• 1,851 views
•
link
updated
by
Christophe Dessimoz
•
written
by
anusblat •
•
written
by
anusblat •
1 answer
What do you mean by "exporting"? You can run the HOG viewer (which we now call "iHam") on your own OrthoXML file (e.g. exported from the OMA browser, or produced by OMA standalone) using the following code:
https://github.com/DessimozLab/iHam
Does this answer your question?
• 0 views
•
link
written
by
Christophe Dessimoz
Log in to answer this question.
More posts like this
-
Obtaining OMA and HOG IDs
written by gtzotzos •
-
Error, (in LoadSpliceMap) string to parse is too long
written by ziqing •
-
To generate genome-wise orthologs including paralogs from OMA
written by mzzzzzzzzzz •
-
Error running OMA standalone at HOG computation step
written by gaurav.diwan •
-
Clusters proteins at each taxonomic rank - OMA
written by anusblat •
-
Error in some hog codes using pyham
written by Biojl
-
Getting the highest taxonomy in the HOG database for a given OMA gene id
written by yogihooda88 •
-
Best way running OMA using SLURM
written by dimar.gonzalez.soto •
-
OMA - How to retrieve orthologs of only one representative of each taxonomy rank?
written by anusblat •
-
Where To Obtain A Species Tree For Phylogenetic Tree Reconciliation
written by miquelduranfrigola
