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Split the fastqc file base on barcode

Hi all,

I have a single fastqc file with some designed barcode. How I would like to split the file into many different files depends on barcodes. However, I want to a loosely grep, that single alteration will still be accapted. For e.g. barcode GGCTTTAA, the alter GCCTTTAA or GC_TTTAA or GCC[N]TTAA will be still be accepted.

Does anyone have an idea?

Best

fastq
• 712 views • link
updated by GenoMax GenoMax • written by QX • QX

1 answer

deML: https://github.com/grenaud/deML

demuxbyname.sh from BBMap suite. Run the program without options to see in-line help.

$ demuxbyname.sh

Written by Brian Bushnell
Last modified Jan 7, 2020

Description:  Demultiplexes sequences into multiple files based on their names,
substrings of their names, or prefixes or suffixes of their names.
Allows unlimited output files while maintaining only a small number of open file handles.
• 0 views • link
written by GenoMax GenoMax

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