Great. Thank you very much!
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Meghan.T •
getting RNA-seq raw counts from Kallisto
Hi everyone,
I am using kallisto quant for RNA-seq data analysis. After running kallisto quant the output looks like this:
I am going to perform DEG analysis with DESeq2 and need raw counts, but the estimated counts are not integer values. Do you have any suggestions?
also posted on kallisto github: https://github.com/griffithlab/rnaseq_tutorial/issues/51
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Meghan.T •
1 answer
See answer from @dsull here: https://support.bioconductor.org/p/9156404/#9156407
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