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Zahra
Zahra
Reputation:
110
Joined:
5.8 years ago
Last seen:
3.4 years ago
Location:
Iran
Latest posts by user
0 votes
1 reply
958 views
How to import downloaded multiple TCGA data in R?
tcgabiolinks r tcga
updated by ATpoint ATpoint • written by Zahra • Zahra
0 votes
2 replies
1.2K views
Is it possible to estimate the concentration or amount of cellular mRNA using RNA-Seq data?
rna-seq deg
updated by Azade • Azade • written by Zahra • Zahra
0 votes
0 replies
725 views
How to show the correlation between the expression of one gene and all the cell miRNAs expression levels?
expression mirna correlation
written by Zahra • Zahra
1 vote
1 reply
1.2K views
Which one do you recommend for the problem with the smaller number of normal samples of TCGA?
deseq2 gtex tcga
updated by i.sudbery i.sudbery • written by Zahra • Zahra
1 vote
1 reply
1.0K views
Does a TCGA dataset need batch effect removal?
batch-effect tcga
updated by Ram Ram • written by Zahra • Zahra
1 vote
0 replies
894 views
microRNAs that can be downloaded from the TCGA are mature or precursor or unknown ?
dea tcga microrna mirna-seq
written by Zahra • Zahra
0 votes
2 replies
1.3K views
What if we have low log2FC and significant adj p-value for a gene?
dea log2fc
updated by Mensur Dlakic Mensur Dlakic • written by Zahra • Zahra
0 votes
0 replies
0 views
Comment: Comment: Why a gene with amplification in copy number shows downregulation in transcripto
written by Zahra • Zahra
0 votes
2 replies
1.3K views
Why a gene with amplification in copy number shows downregulation in transcriptome level?
gene alteration deg cnv amplification
written by Zahra • Zahra
0 votes
0 replies
669 views
Does PCAWG have any advantage compared to TCGA for studying protein-coding regions?
tcga pcawg
written by Zahra • Zahra
0 votes
3 replies
1.5K views
Is the promoter part of whole of gene in the UCSC database?
ucsc vcf bed promoter
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Zahra • Zahra
0 votes
0 replies
0 views
Comment: Comment: Why a gene in UCSC has different positions?
written by Zahra • Zahra
0 votes
3 replies
1.4K views
Why a gene in UCSC has different positions?
ucsc bed
updated by Papyrus Papyrus • written by Zahra • Zahra
0 votes
1 reply
834 views
How to find the position of genes that their variants called by hs37d5?
hs37d5 pcawg
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Zahra • Zahra
0 votes
0 replies
0 views
Comment: Comment: A question about BED file and finding mutation in vcf file
written by Zahra • Zahra
0 votes
3 replies
1.6K views
A question about BED file and finding mutation in vcf file
vcf bed
written by Zahra • Zahra
0 votes
1 reply
1.1K views
How to subset the mutations that occur just in my interest genes within the vcf file?
vcf vcftools bed
updated by ATpoint ATpoint • written by Zahra • Zahra
1 vote
2 replies
4.9K views
How to add color gradient guide to my FeaturePlot?
seurat featureplot
updated by Rafael Soler • Rafael Soler • written by Zahra • Zahra
0 votes
1 reply
0 views
Comment: Comment: How to find DEG within a cluster between two groups without any replication info
written by Zahra • Zahra
0 votes
3 replies
1.7K views
How to find DEG within a cluster between two groups without any replication information in scRNA-Seq analysis?
scrna-seq seurat pseudobulk
updated by piyushjo piyushjo • written by Zahra • Zahra
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