Does a TCGA dataset need batch effect removal?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Batch correction of TCGA data from TCGAbiolinks and cBioPortal
written by Petesview •
-
How to import downloaded multiple TCGA data in R?
written by Zahra •
-
Which one do you recommend for the problem with the smaller number of normal samples of TCGA?
written by Zahra •
-
Does PCAWG have any advantage compared to TCGA for studying protein-coding regions?
written by Zahra •
-
How to extract count matrix from TCGAbiolinks using STAR-Counts
written by Xiaofan •
-
ATACseq batch effect coupled with biological effect
written by pt.taklifi
-
Breast cancer expression data with subtype information
written by sabin •
-
BATCH EFFECT REMOVAL
written by Rishabh Jha •
-
RNA-seq batch effect remove
written by 9521ljh •
-
Question: Rna Raw Count and Gene expression correlation
written by salvatore.digiorgio •
You need to analyze the expression matrix to see if there is any batch effect present in your dataset. A PCA analysis would give you insights on that.