This is a test version of Biostars. For the public version, visit https://www.biostars.org.
loughrae
loughrae
Reputation:
90 (Trusted)
Joined:
8.3 years ago
Last seen:
1.7 years ago
Location:
Ireland
Latest posts by user
0 votes
1 reply
0 views
Comment: Comment: Bulk converting superseded TCGA UUIDs
written by loughrae 9
0 votes
4 replies
1.4K views
Bulk converting superseded TCGA UUIDs
r tcgautils tcga
updated by Zhenyu Zhang 130 • | written by loughrae 9
0 votes
1 reply
0 views
Comment: Comment: Non-zero expression counts from deleted genes
written by loughrae 9
0 votes
3 replies
1.6K views
Non-zero expression counts from deleted genes
tpm rna-seq copy-number tcga
updated by benformatics 426 • | written by loughrae 9
1 vote
1 reply
1.2K views
Can you compare the abundance of different proteins within a sample?
ccle tcga proteomics
updated by ATpoint 9.1K • | written by loughrae 9
0 votes
0 replies
819 views
TCGA patient death dates
cancer tcga data clinical
written by loughrae 9
0 votes
0 replies
0 views
Comment: Comment: 20,000 Ensembl gene IDs with external gene name in hg19 but not in hg38
written by loughrae 9
0 votes
1 reply
0 views
Comment: Comment: 20,000 Ensembl gene IDs with external gene name in hg19 but not in hg38
written by loughrae 9
0 votes
4 replies
3.2K views
20,000 Ensembl gene IDs with external gene name in hg19 but not in hg38
ensembl biomart
written by loughrae 9
0 votes
1 reply
0 views
Comment: C: Problems specifying data.type and sample.type in TCGAbiolinks GDCquery
written by loughrae 9
0 votes
3 replies
4.0K views
Problems specifying data.type and sample.type in TCGAbiolinks GDCquery
tcga tcgabiolinks r
updated by jain72744 1 • | written by loughrae 9
0 votes
1 reply
0 views
Comment: C: to annotate BEDPE files
written by loughrae 9
1 vote
0 replies
0 views
Comment: C: Getting standard 12-column format for a list of genes
written by loughrae 9
0 votes
0 replies
0 views
Comment: C: Understanding TCGA's ASCAT copy number data
written by loughrae 9
0 votes
2 replies
0 views
Comment: C: Understanding TCGA's ASCAT copy number data
written by loughrae 9
1 vote
6 replies
9.1K views
Understanding TCGA's ASCAT copy number data
tcga ascat copy number
updated by Kevin Blighe 9.0K • | written by loughrae 9
4 votes
0 replies
0 views
Answer: A: Ggplot2 + Gene Labels
written by loughrae 9
0 votes
1 reply
0 views
Comment: C: Ggplot2 + Gene Labels
written by loughrae 9
1 vote
0 replies
0 views
Answer: A: Error in getBM: accessing Ensembl annotation with biomaRt
written by loughrae 9
1 vote
0 replies
0 views
Answer: A: Retrieve initial query in getBM()
written by loughrae 9
Latest awards to user
TODO: Awards