TSS sites annotation for hg38
Hi,
I am looking for a TSS sites annotation for hg38, I noted FANTOM5 has published a annotation file, https://fantom.gsc.riken.jp/5/datafiles/phase1.3/extra/TSS_classifier/.
However, since this file was created a long time ago, I cannot determine whether the data is based on the hg38 version or an earlier hg19 version. Are there any more recent annotation files available?
Regards.
• 1,103 views
•
link
0 answers
No answers yet.
Log in to answer this question.
Lifted over data for hg38 is available here: https://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_latest/extra/CAGE_peaks/breakdown/
Hi, thanks for your suggestion, but the bed file in
https://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_latest/extra/CAGE_peaks/breakdown/is differ fromhttps://fantom.gsc.riken.jp/5/datafiles/phase1.3/extra/TSS_classifier/