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Ian
Ian
Role:
Moderator
Reputation:
6,140
Joined:
16.1 years ago
Last seen:
8 months ago
Location:
University of Manchester, UK
Google Scholar:
K74MpBUAAAAJ
Twitter:
IanDcalling

Member of the Faculty of Life Science's bioinformatics core facility.

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http://www.youtube.com/user/ManchesterBCF/videos?view=1&flow=grid for video tutorials.

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I specialise in ChIP-seq analysis, but also run RNA-seq and other NGS applications. Data comes, almost exclusively from illumina sequencers, but I used to mostly analyse SOLiD sequence.

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I am interested in the analysis, organisation and presentation of genomics data. I have a special place in my heart for the hunting of transcription factor binding sites.

Latest posts by user
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Comment: Comment: ChIP-Seq with one poor replicate, one good
written by Ian Ian
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Answer: Answer: My ChIP-seq mapped reads are not evenly distributed in R1 and R2 fastq file
written by Ian Ian
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Answer: Answer: ChIP-Seq with one poor replicate, one good
written by Ian Ian
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Forum: Variant calling (SNV/InDel): is only using properly paired reads recommended?
mapping variants
updated by GenoMax GenoMax • written by Ian Ian
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Comment: Comment: Why counting by diffbind and featurecounts differ?
written by Ian Ian
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Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
written by Ian Ian
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Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
written by Ian Ian
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Answer: Answer: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
written by Ian Ian
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Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
written by Ian Ian
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Comment: Comment: Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, an
written by Ian Ian
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Comment: Comment: How to use output from GeneMark-ES to identify function?
written by Ian Ian
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8 replies
2.6K views
Problem obtaining RNA-seq counts for whole gene (intron and exon), exon only, and intron only
rna-seq featurecounts
written by Ian Ian
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Comment: Comment: Trying to understand basic DiffBind usage
written by Ian Ian
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Answer: Answer: Trying to understand basic DiffBind usage
written by Ian Ian
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Comment: Comment: Confirmation required on how DiffBind generates union of regions (min. 1bp overl
written by Ian Ian
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Comment: Comment: Confirmation required on how DiffBind generates union of regions (min. 1bp overl
written by Ian Ian
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Confirmation required on how DiffBind generates union of regions (min. 1bp overlap or gap)?
diffbind
written by Ian Ian
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Comment: Comment: Getting differential ChIP-seq peaks between conditions after calling consensus p
written by Ian Ian
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Answer: Answer: How to make the Input track flat for ChIP-seq
written by Ian Ian
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Answer: Answer: DEG gene list and find common TF from public ChlP-Seq data
written by Ian Ian
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