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0 votes
1 reply
943 views
Comparing solubility and hydrophilicity
protein hydrophilicity modelling pymol solubility
written by Hansen_869 8
0 votes
3 replies
1.2K views
Canu errors
genome assembly canu
updated by colindaven 844 • | written by joshua.j.wright 1
0 votes
0 replies
740 views
How can I create genetic map for impute2 using vcf files containing SNPs?
imputation vcftools snps plink impute2
written by Sakib 0
0 votes
2 replies
1.1K views
number of SNPs per sample in multi-sample VCF file
vcf bcftools
updated by dthorbur 350 • | written by reza 30
1 vote
3 replies
2.5K views
R design on 2-way interaction not displaying all options
modeling design limma deseq edger
updated by mflab 0 • | written by fr 22
0 votes
6 replies
1.7K views
Strange pattern of uneven read count distribution
wgs fluctuating coverage
written by BioStar22 0
0 votes
4 replies
1.3K views
Ontology for column naming in RNA-seq data
python scanpy anndata single-cell
updated by GenoMax 16K • | written by AlexStar 22
0 votes
2 replies
1.8K views
FST Calculation: Resolving -nan Issue in Population Genetics Analysis
nucleotidediversity pacbio mtdna
written by hashim.rana11 4
2 votes
12 replies
3.5K views
Are short reads still required for polishing?
polishing assembly nanopore dorado illumina
updated by lieven.sterck 1.6K • | written by shelkmike 201
0 votes
1 reply
856 views
downloading protein seqences from STRING database
stringdb proteinseqences stirngapi string
updated by GenoMax 16K • | written by m.ciolek 0
1 vote
6 replies
2.0K views
IGV: first bases of each chromosomes missing when loading genome file
igv
written by Pierre 4
0 votes
2 replies
871 views
Help with treetime ancestral MissingDataError
alignment treetime multifasta
updated by Dave Carlson 223 • | written by FJCF 0
0 votes
1 reply
1.1K views
Single cell cluster naming
single-cell
updated by Ram 4.5K • | written by sc_confusion 0
0 votes
5 replies
1.6K views
STAR alignment for RNA seq - trouble occurred
alignment star rna-seq gtf
written by ohtang7 4
1 vote
2 replies
1.9K views
Generating multiple species reference for CellRanger
cellranger mkref 10x
updated by GenoMax 16K • | written by nathansuek 2
0 votes
0 replies
694 views
Best pipeline for calling SNPs in a bi-parental haploid population?
snp biparental illumina polymorphism bi-parental
written by barleyslayer 0
0 votes
1 reply
1.6K views
IGV large deletions
deletion igv
updated by wakaruszka 5 • | written by Mohammad Amin 0
0 votes
4 replies
1.6K views
Why higher read counts in chromosome M/MT
igv mt-dna count mitochondria read
updated by wakaruszka 5 • | written by Lou11 0
0 votes
1 reply
992 views
Requesting Insights on Potential Complex Structural Event Indicated by IGV
manta igv variant translocation structural
updated by wakaruszka 5 • | written by pragnapcu 1
0 votes
0 replies
485 views
Reading old ABI raw mac files
377 310 abi
written by danielmyers76 0
0 votes
3 replies
1.0K views
how to choose cufflinks library type from infer_experiment
rseqc rnaseq cufflinks
updated by GenoMax 16K • | written by sgupt46 0
0 votes
0 replies
671 views
bcftools filter appy to sub regions
bcftools filter
updated by Pierre Lindenbaum 17K • | written by qwzhang0601 8
0 votes
0 replies
531 views
why STAR --clip[3p,5p]Nbases show up in the bam?
star clipping alignment
updated by LChart 518 • | written by mk 31
0 votes
2 replies
1.4K views
Unable to link peaks to genes for multiomics data
multiomics signac atacseq
written by bgbs 0
0 votes
3 replies
1.1K views
RNA-seq's strange genes
rna-seq
written by SeoG 1
0 votes
6 replies
2.3K views
Could Anyone Help Me with Seurat code
doubletfinder seurat
written by ANHAO 0
0 votes
0 replies
611 views
Deconvolution cibersortx
cibersortx teleost deconvolution
written by Nerea 0
0 votes
0 replies
819 views
News: Genome Assembly and Annotation course (online, 17-21 March 2025)
genome-annotation nanopore pacbio illumina genome-assembly
written by Physalia-courses 281
0 votes
8 replies
3.2K views
Converting gene_ids from GTF file to common gene symbols
gene_id gtf symbol
written by Gus 0
0 votes
0 replies
430 views
getfasta bedtools from NDARO
bedtools-getfasta
written by Elham 0
0 votes
0 replies
421 views
EstiAge files
estiage mutation
written by lorena9132 1
0 votes
0 replies
989 views
Job: Machine Learning Scientist in Multimodal Data Integration
multiomics ml ai
written by Sergio Martínez Cuesta 23
0 votes
2 replies
974 views
issue with percent mitochondria from txt file
seurat
written by Synat 0
0 votes
4 replies
2.2K views
Optimizing VCF File Merging Using bcftools
bcftools merge parallelize wgs
written by j.k3096 2
0 votes
1 reply
930 views
vg: transfer FASTQ comment to SAM tag a la `bwa mem -C`
vg
updated by Jordan M Eizenga 78 • | written by tahermun 0
0 votes
1 reply
1.1K views
Pipeline for Illumina GSAv3 in Beagle, ADMIXTURE and qpAdm?
plink admixture beagle qpadm gsa
updated by barslmn 245 • | written by Leandro 0
4 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, November 25, 2024
herald
written by Biostar 380
0 votes
2 replies
1.2K views
Creating CRC32 hashes in a CRAM file header
samtools htslib crc32 cram
updated by jkbonfield 133 • | written by onter 17
7 votes
4 replies
5.2K views
News: New more compact NCBI BLAST Core Nucleotide Database (core_nt) now available on the web
ncbi blast
updated by GenoMax 16K • | written by PeterC_NCBI 53
0 votes
2 replies
1.4K views
scRNA-seq from cell count matrix and DESeq2
r deseq2 scrna-seq
updated by ATpoint 9.1K • | written by CrisF 0
0 votes
4 replies
1.4K views
Duplicate ENSGids in the result file quant.genes.sf from Salmon
quant.genes.sf salmon
written by francesca.catellani 0
0 votes
3 replies
1.1K views
Conversion of gene ids between Gencode V24 and Gencode V38
gencode
updated by ATpoint 9.1K • | written by Sayan 0
0 votes
1 reply
1.1K views
"EXTID2PATHID" error in DOSE
r dose
updated by andysw90 2 • | written by nizamov.1999 0
2 votes
5 replies
2.2K views
Tool: filterx : fast and efficient filter tool written in Rust for csv,fasta,fastq,gff,vcf,sam files.
csv fasta fastq
updated by Istvan Albert 10K • | written by dwpeng 14
0 votes
1 reply
1.2K views
News: course - Longitudinal Data Analysis in R (online, December 16-19)
r machine-learning depp-learning longitudinal-data
written by Physalia-courses 281
0 votes
0 replies
783 views
ATAC Seq Differential Peaks
atac-seq differential-peaks
written by Bruno 0
2 votes
8 replies
19K views
Differences between SMART-seq2, SMART-seq3, and 10x
10x umi smartseq single-cell
updated by Ram 4.5K • | written by hamarillo 8
0 votes
1 reply
1.1K views
Error While Using BSmooth in bsseq
error bsmooth wgbs bsseq methylation
written by Burak Özyürek 1
0 votes
2 replies
1.6K views
scATAC-seq (Sinac)
atacseq
written by Synat 0
0 votes
4 replies
1.6K views
How to Handle Incorrect Clade Grouping of a Reference Genome in a Phylogenetic Tree?
tree clade incorrect phylogenetic reference genome
written by oasiswho 0
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