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3 votes
4 replies
2.2K views
Job: Permanent Position as Bioinformatician at the National Genomics Infrastructure (Sweden)
stockholm sweden scilifelab genomics sequencing
written by Matthias Zepper Matthias Zepper
0 votes
2 replies
1.6K views
Giraffe DeepVariant workflow
deepvariant vg giraffe
updated by Istvan Albert Istvan Albert • written by DBScan • DBScan
0 votes
1 reply
934 views
Protein abundance-Metagenomes
diamond abundance protein metagenomes
written by erinda • erinda
0 votes
8 replies
2.0K views
making estimated proteome from genome
ncbi
updated by Mensur Dlakic Mensur Dlakic • written by dec986 dec986
3 votes
6 replies
1.8K views
Tool: Any Paper: Ultra-fast QA and literature search based on Pubmed papers.
literature-search ai
written by Alan Liu • Alan Liu
0 votes
1 reply
5.2K views
Plotting Gene Ontology analysis results and questions about Fold Enrichment and other parameters
ontology enrichment gene go
updated by Lachlan • Lachlan • written by Raito92 Raito92
0 votes
2 replies
3.0K views
Can anyone help me with this script error?
gsva
written by nuorain • nuorain
1 vote
3 replies
1.5K views
Combine GBS and WGS data for variant calling in GWAS analysis
gbs combined wgs
updated by Denis Denis • written by behnam • behnam
1 vote
0 replies
824 views
Job: Job Opening - Post-Doctoral Research Fellow - Cancer Immunotherapy
systems-biology immunology protein-engineering research-fellow postdoc
updated by Ram Ram • written by Fred Hutch (Recruiting) Fred Hutch (Recruiting)
0 votes
6 replies
1.9K views
How to include the lane index in STARsolo count matrix barcodes.tsv?
10x starsolo singlecell star alignment
updated by jared.andrews07 jared.andrews07 • written by mk mk
0 votes
3 replies
1.6K views
miloR - object 'as.SimpleList' of mode 'function' was not found when running calcNhoodDistance
seurat scrna-seq milor
written by shuaizh117 • shuaizh117
0 votes
2 replies
1.0K views
How to Identify Strain-Specific HPV and EBV Integration Sites in Human Whole Genome Sequencing Data?
ebv hpv genomics
updated by GenoMax GenoMax • written by adam • adam
1 vote
3 replies
1.7K views
Can I combine variants called using T2T-CHM13 with GRCh38?
chm13 t2t-chm13
updated by Jeremy Leipzig Jeremy Leipzig • written by Rina • Rina
1 vote
2 replies
2.3K views
Getting gnomAD allele frequencies for checking against populations
gnomad ancestry allele-frequency
updated by Jeremy Leipzig Jeremy Leipzig • written by Peter • Peter
0 votes
1 reply
973 views
Using reference genome for GSEA for different strains of the same bacterial species
rnaseq gsea
updated by Istvan Albert Istvan Albert • written by Texx • Texx
0 votes
3 replies
1.3K views
lncRNA and mRNA analysis on Total RNA Sequencing data
mrna rnaseq lncrna
updated by Istvan Albert Istvan Albert • written by kanika.151 kanika.151
0 votes
0 replies
630 views
News: Course: Structural Variant Bioinformatics
long-reads nanopore pacbio structural-variations
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
2 replies
1.4K views
BSQR in GATK without known variants
gatk
written by fuwamozu • fuwamozu
0 votes
0 replies
636 views
How to Reconstruct and Visualize Mitochondrial Primary Transcripts Using RNA-Seq Data?
rna-seq mitochondria transcriptomics minimap2
updated by GenoMax GenoMax • written by hashim.rana11 • hashim.rana11
0 votes
9 replies
1.9K views
metaspades error
metaspades
written by pranjalarun10 • pranjalarun10
0 votes
1 reply
718 views
Multiple entries in a some columns on FeatureCounts output
featurecounts
updated by biofalconch biofalconch • written by myoui3122010 • myoui3122010
0 votes
9 replies
2.1K views
How do I integrate public annotated data onto my data set?
selectintegrationfeatures integratedata seurat tabula-muris
updated by Bastien Hervé Bastien Hervé • written by Assa Yeroslaviz Assa Yeroslaviz
0 votes
2 replies
1.3K views
Problem in count Matrix from Featurecount
countmatrix featurecount bam
updated by GenoMax GenoMax • written by daffodil • daffodil
0 votes
2 replies
1.8K views
Integrating TCGA tumor RNAseq data with normal tissue samples from other sources
rna-seq prps dge tcga ruv-iii
written by CielDV • CielDV
0 votes
2 replies
909 views
how to get genomic location of transcript positions
genomic-location m6anet
updated by GenoMax GenoMax • written by baibhu1234 • baibhu1234
0 votes
0 replies
580 views
News: Phylogenomics course - online Dec 2-6
bayesian-analyses phylogenomics genomics-data
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
6 replies
1.3K views
WES and GBAP1
wes homology gba ngs
written by Joel Wallenius Joel Wallenius
0 votes
0 replies
1.0K views
Minimum number of replicates when doing scRNA-seq using cell-lines?
design 10x single-cell
written by txema.heredia • txema.heredia
0 votes
4 replies
1.8K views
Workstation RAM speed vs capacity
ngs workstation ai
updated by LChart LChart • written by r.d.jongh • r.d.jongh
1 vote
6 replies
2.0K views
Why there are 40 chromosomes of Gallus gallus in NCBI and in the in karyotype studies there is only evidence of 39 chromosome
genome-assembly
updated by Ram Ram • written by BenAawf • BenAawf
0 votes
2 replies
1.6K views
somatic copy number calling with ONT long-reads
ont somatic cancer cnv nanopore
written by eebloom • eebloom
0 votes
3 replies
1.3K views
Biostatistics
anova post biostatistics hoc
updated by Gordon Smyth Gordon Smyth • written by RCMC • RCMC
0 votes
0 replies
505 views
Input for Powermarker
powermarker snp
updated by GenoMax GenoMax • written by Smilesky • Smilesky
0 votes
0 replies
795 views
TCRdist3
tcrdist3 tcr vdj
written by jl_oxforduni • jl_oxforduni
0 votes
1 reply
637 views
No gene and PAV has overlap warning while constructing pangenome
pangenome
updated by IrisChang • IrisChang • written by Bushra Bibi Bushra Bibi
0 votes
1 reply
892 views
How to compare and complement the missing gene and feature in gff3 file base on available gff3 reference ?
gff3 irgsp1.0 maker
updated by lieven.sterck lieven.sterck • written by Sony Nguyen • Sony Nguyen
1 vote
5 replies
2.9K views
Can I combine the GBS data with Whole Genome Resequencing for GWAS analysis
sequencing snp
updated by behnam • behnam • written by gengyang12138 • gengyang12138
0 votes
4 replies
1.6K views
Need to remove duplicates from GBS data?
gbs samblaster duplicates
written by MMW • MMW
0 votes
1 reply
1.0K views
fragment size estimation during vg mpmap and rpvg
vg
updated by Jordan M Eizenga • Jordan M Eizenga • written by Juhyun • Juhyun
0 votes
0 replies
506 views
Junction Saturation for AS analysis
ont splice-junctions
updated by Ram Ram • written by coolmattmonkey • coolmattmonkey
0 votes
5 replies
1.8K views
MISO Sorted BAM file header mismatch
bam miso sam minimap2
updated by Istvan Albert Istvan Albert • written by bimeva5703 • bimeva5703
1 vote
1 reply
741 views
Aptamer design
aptamer
updated by Matthias Zepper Matthias Zepper • written by MUHAMMAD SHAFIQ • MUHAMMAD SHAFIQ
0 votes
1 reply
1.3K views
Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how to address this issue?
degseq deseq2 edger rnaseq
updated by GenoMax GenoMax • written by Jonathan • Jonathan
1 vote
0 replies
438 views
I want to run fisher's exact test on my haplotype data for multiple genes.
haplotype
written by vinita14ramtekey • vinita14ramtekey
0 votes
1 reply
929 views
Merging multiple runs of the same samples
metaspades fastq megahit shotgun metagenomics sequencing
updated by GenoMax GenoMax • written by bioinformaticssrm2011 bioinformaticssrm2011
3 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, November 18, 2024
herald
written by Biostar Biostar
0 votes
2 replies
900 views
wrapping htslib and parsing CRAM files
expansionhunterdenovo htslib cram
written by chrisclarkson100 chrisclarkson100
0 votes
0 replies
409 views
How to name substructures of a molecule using SMARTS patterns?
substructures molecules rdkit smarts chemoinformatics
written by phoenix.sum13 • phoenix.sum13
0 votes
2 replies
835 views
Length Polymorphism using long read Nanopore
genotyping nanopore
written by pixie@bioinfo pixie@bioinfo
1 vote
0 replies
485 views
CNV Analysis for single bulk RNA-Seq Sample
cnv rna-seq
updated by Ram Ram • written by hkarakurt hkarakurt
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