This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
2 replies
3.9K views
What is the difference between the SCT data stored in data and scale.data in Seurat?
ngs seurat scrna-seq
written by zhang616123 0
0 votes
2 replies
2.2K views
Can't update ClusterProfiler to 4.12.6
r clusterprofiler
updated by ATpoint 9.1K • | written by Francois Piumi 8
0 votes
0 replies
683 views
Merging multiple samples Copy number variation file and annotating
cancer annotation germline somatic cnv
written by Anitha 1
0 votes
1 reply
850 views
SRA-Submission query (BioProject)
ngs raw sra data
updated by GenoMax 16K • | written by adarsh 8
0 votes
2 replies
1.7K views
Job: Looking for a mentor in bioinformatics with animal selection specialization
selection. animal bioinformatics. mentor.
written by biology.may20 2
1 vote
6 replies
9.7K views
How to convert maf to vcf while retaining original mutation notations?
vcf maf
updated by RUBA 0 • | written by steve 356
2 votes
1 reply
1.2K views
News: Course on Manuel Genome Curation using PretextView (Online)
hi-c genome-assembly manuel-curation pretextview
updated by shinken123 15 • | written by Physalia-courses 281
1 vote
0 replies
690 views
Tool: STRprofiler: efficient comparisons of short tandem repeat profiles for biomedical model authentication
xenograft cell-line model-authentication str-profiling short-tandem-repeats
written by jared.andrews07 1.9K
1 vote
2 replies
1.7K views
best practices for integrating
scrna-seq integration
updated by yura.grabovska 94 • | written by Nal23 1
0 votes
0 replies
774 views
Determining Primary, Intermediate, and Mature Mitochondrial Transcripts, and Inferring mtRNA Gene Boundaries
mitogenome pacbio rna-seq transcript primary_transcripts identification primary
written by hashim.rana11 4
0 votes
3 replies
1.6K views
Converting metadata.csv file into seurat object
scrna-seq analysis
updated by jared.andrews07 1.9K • | written by iqra 0
0 votes
0 replies
605 views
Help in understanding metadata in TCGA skin cancer RangedSummarizedExperiment
metadata t tcga
written by Lexi 0
1 vote
5 replies
1.9K views
snRNA-seq of the healthy human brain
python scanpy anndata single-cell
updated by LChart 518 • | written by AlexStar 22
0 votes
10 replies
7.6K views
Forum: insert figure and code in the post of Biostars?
meta biostars
updated by Saeed 1 • | written by Zhilong Jia 222
0 votes
5 replies
1.6K views
How can I plot a step graph in R?
recurrence step-graph survival
updated by GenoMax 16K • | written by prithvi.mastermind 6
0 votes
4 replies
1.5K views
GO analysis
ggplot2 enrichment go analysis
updated by GenoMax 16K • | written by Saeed 1
0 votes
2 replies
1.2K views
ATACseq Data Insert Size Plot
insertsize atac-seq picard
written by lingjun meng 2
2 votes
8 replies
4.2K views
Variant Caller for Bacterial Amplicon Sequenced with Nanopore
bacterial-genome variant-calling nanopore amplicon-sequencing
updated by colindaven 844 • | written by gtiegs 2
0 votes
4 replies
1.8K views
Has anyone tried absence or presence heatmap ? (Or suggestion)
r absence heatmap grouping
updated by KABILAN 13 • | written by ohtang7 4
0 votes
2 replies
968 views
Using cutadapt for phased primer cleaning
trimming
written by 1769mkc 127
0 votes
2 replies
1.0K views
Can I use FDR twice for multiple correction in a two-stage study using omics data.
statistical omics-data testing rna-seq
written by Apprentice 19
0 votes
1 reply
1.5K views
CUT&RUN spike in normalization in differential binding analysis (with replicates).
cutandrun spikein. differentialbinding csaw
updated by ATpoint 9.1K • | written by koleilat.karim 0
0 votes
2 replies
1.3K views
Finding homologous sequences that have crystal structures
proteins genes sequences homologs blast
updated by Dunois 301 • | written by Hansen_869 8
0 votes
2 replies
1.0K views
Tool: Introducing SnakeMake.IO – Enhancing Snakemake Workflow Management
snakemake
updated by tim.booth 11 • | written by snakemakeioapp 0
0 votes
7 replies
2.5K views
Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal)
germline somatic rna-seq mutect2 deepvariant
written by don 0
0 votes
5 replies
1.9K views
How can I know exactly what the features of members of B gene family have and what their domains and motifs are?
family domain protein
updated by lieven.sterck 1.6K • | written by El-32 0
0 votes
0 replies
391 views
mutated vs wild type DEG analysis using TCGAbiolinkers for COAD data
tcgabiolinkers
written by RUBA 0
2 votes
5 replies
6.5K views
Differential Gene Expression Analysis using data_RNA_Seq_v2_expression_median RSEM.Normalized
rna-seq limma r dge
updated by RUBA 0 • | written by gokce.ouz 9
0 votes
2 replies
1.6K views
Is It Possible to Calculate Microsatellite Instability (MSI) Directly from MAF Files or TCGA Data?
instability maf microsatellite msi
written by Jaber 3
0 votes
4 replies
1.9K views
Calculating TMB for TCGA data
mutations maftools tmb
updated by Zhenyu Zhang 130 • | written by Jaber 3
0 votes
4 replies
1.4K views
cnv detection in cow
cow cnv
written by hamideh 2
0 votes
2 replies
1.1K views
Extract directionality from Reactome
pathways reactome biopax
written by Nikolas 0
0 votes
3 replies
1.2K views
Converting alignment in image format to text
image alignment text
updated by GenoMax 16K • | written by Hansen_869 8
0 votes
1 reply
774 views
Global alignment of protein sequences all x all to identify similarities between them
needle protein global-alignment emboss
updated by Ram 4.5K • | written by Bruna Avelino 1
0 votes
2 replies
3.0K views
Fastp Trimming for WGS
fastp fastq preprocessing wgs
updated by GenoMax 16K • | written by j.k3096 2
1 vote
4 replies
1.5K views
PossionDis method for identification of differentially expressed genes.
differential-expression deg statistics rnaseq
updated by Ram 4.5K • | written by M 1
0 votes
4 replies
1.9K views
Issues adding GTF track to split genome on IGV
igv
updated by Michael Dondrup 5.6K • | written by Daisy 0
0 votes
1 reply
1.3K views
Identifying gene copy number in genome assembly
cnv assembly copy-number gene
updated by lieven.sterck 1.6K • | written by pedro.rrmb 0
0 votes
5 replies
3.2K views
Public patient database for Alzheimer's disease patients
database
updated by Moris 0 • | written by Tobias 15
0 votes
4 replies
1.6K views
Variant calling from rnaseq
calling variant rnaseq
written by Julián 0
0 votes
0 replies
680 views
Subtelomeric coordinates for the human CHM13 T2T genome in BED format
marbl chm13 subtelomeric t2t bed
written by eusoleroliva 0
0 votes
2 replies
1.2K views
Can you help me understand these lines in the completed braker.log
augustus braker genome annotation
updated by lieven.sterck 1.6K • | written by Vijith 10
1 vote
8 replies
2.3K views
DE analysis from kallisto estimated counts (only)
deviation de limma voom
updated by GenoMax 16K • | written by Lila M 130
0 votes
5 replies
1.5K views
Orientation of deregulated gene in DGE analysis
limma edger dge contrasts
updated by Bastien Hervé 680 • | written by mesebaesko 1
0 votes
3 replies
1.2K views
metaboanalystR crashing on (Mac/Windows) laptop
metabolomics metaboanalystr r-studio
updated by Michael Dondrup 5.6K • | written by microorganism_001 3
0 votes
3 replies
1.0K views
Do I have to remove overlapping reads from paire_end data before Metahplan?
overlapping paired_ends metaphaln
updated by GenoMax 16K • | written by michelafrancesconi9 3
3 votes
12 replies
10K views
How To Learn About Next Generation Gene Sequencing
sequencing
updated by Harry 0 • | written by Medhat 981
0 votes
4 replies
1.4K views
predector exit status (137)
predector
updated by GenoMax 16K • | written by Bushra Bibi 8
0 votes
4 replies
1.4K views
Logistic regression to separate 2 conditions
marker-genes logistic-regression
updated by Mensur Dlakic 3.0K • | written by yves33 0
0 votes
3 replies
1.7K views
samtools version 1.17 having difficulty parsing a filtering command. advice?
samtools cell rnaseq single
updated by aw7 40 • | written by RNAseqer 30
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