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Can't update ClusterProfiler to 4.12.6

It seems that the new version of ClusterProfiler is 4.12.6 according to the GitHub page.

I ran this script :

if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("clusterProfiler")

But I'm still with the 4.6.2 version.

Any ideas?

Thanks

r clusterprofiler
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updated by ATpoint ATpoint • written by Francois Piumi • Francois Piumi

1 answer

The most up-to-date and official version of the package is 4.14.3, see https://bioconductor.org/packages/release/bioc/html/clusterProfiler.html.

The latest version on GitHub is 4.15.1.001, see https://github.com/YuLab-SMU/clusterProfiler/blob/devel/DESCRIPTION

However, Bioconductor versions are tied to the underlying version of Bioconductor itself, so if for example you're still using Bioc 3.16 you would not be able to upgrade, given that you want to use BiocManager. If you want to pull directly from GitHub then use BiocManager::install(YuLab-SMU/clusterProfiler).

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written by ATpoint ATpoint

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