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0 votes
8 replies
3.2K views
Converting gene_ids from GTF file to common gene symbols
gene_id gtf symbol
written by Gus • Gus
0 votes
0 replies
428 views
getfasta bedtools from NDARO
bedtools-getfasta
written by Elham • Elham
0 votes
0 replies
415 views
EstiAge files
estiage mutation
written by lorena9132 • lorena9132
0 votes
0 replies
978 views
Job: Machine Learning Scientist in Multimodal Data Integration
multiomics ml ai
written by Sergio Martínez Cuesta Sergio Martínez Cuesta
0 votes
2 replies
962 views
issue with percent mitochondria from txt file
seurat
written by Synat • Synat
0 votes
4 replies
2.1K views
Optimizing VCF File Merging Using bcftools
bcftools merge parallelize wgs
written by j.k3096 • j.k3096
0 votes
1 reply
914 views
vg: transfer FASTQ comment to SAM tag a la `bwa mem -C`
vg
updated by Jordan M Eizenga • Jordan M Eizenga • written by tahermun • tahermun
0 votes
1 reply
1.0K views
Pipeline for Illumina GSAv3 in Beagle, ADMIXTURE and qpAdm?
plink admixture beagle qpadm gsa
updated by barslmn • barslmn • written by Leandro • Leandro
4 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, November 25, 2024
herald
written by Biostar Biostar
0 votes
2 replies
1.2K views
Creating CRC32 hashes in a CRAM file header
samtools htslib crc32 cram
updated by jkbonfield jkbonfield • written by onter onter
7 votes
4 replies
5.1K views
News: New more compact NCBI BLAST Core Nucleotide Database (core_nt) now available on the web
ncbi blast
updated by GenoMax GenoMax • written by PeterC_NCBI • PeterC_NCBI
0 votes
2 replies
1.4K views
scRNA-seq from cell count matrix and DESeq2
r deseq2 scrna-seq
updated by ATpoint ATpoint • written by CrisF • CrisF
0 votes
4 replies
1.3K views
Duplicate ENSGids in the result file quant.genes.sf from Salmon
quant.genes.sf salmon
written by francesca.catellani • francesca.catellani
0 votes
3 replies
1.0K views
Conversion of gene ids between Gencode V24 and Gencode V38
gencode
updated by ATpoint ATpoint • written by Sayan • Sayan
0 votes
1 reply
1.1K views
"EXTID2PATHID" error in DOSE
r dose
updated by andysw90 • andysw90 • written by nizamov.1999 • nizamov.1999
2 votes
5 replies
2.2K views
Tool: filterx : fast and efficient filter tool written in Rust for csv,fasta,fastq,gff,vcf,sam files.
csv fasta fastq
updated by Istvan Albert Istvan Albert • written by dwpeng • dwpeng
0 votes
1 reply
1.2K views
News: course - Longitudinal Data Analysis in R (online, December 16-19)
r machine-learning depp-learning longitudinal-data
written by Physalia-courses Physalia-courses
0 votes
0 replies
774 views
ATAC Seq Differential Peaks
atac-seq differential-peaks
written by Bruno • Bruno
2 votes
8 replies
19K views
Differences between SMART-seq2, SMART-seq3, and 10x
10x umi smartseq single-cell
updated by Ram Ram • written by hamarillo • hamarillo
0 votes
1 reply
1.1K views
Error While Using BSmooth in bsseq
error bsmooth wgbs bsseq methylation
written by Burak Özyürek • Burak Özyürek
0 votes
2 replies
1.5K views
scATAC-seq (Sinac)
atacseq
written by Synat • Synat
0 votes
4 replies
1.6K views
How to Handle Incorrect Clade Grouping of a Reference Genome in a Phylogenetic Tree?
tree clade incorrect phylogenetic reference genome
written by oasiswho • oasiswho
0 votes
3 replies
1.3K views
Is this featureCounts output normal, and how can I process it for DESeq2 analysis?
rna-seq featurecounts deseq2
updated by Gordon Smyth Gordon Smyth • written by DdogBoss • DdogBoss
0 votes
1 reply
1.5K views
Iterative clustering with silhouette score
clustering resolution silhouette single-cell
updated by Mensur Dlakic Mensur Dlakic • written by sleepystudent • sleepystudent
0 votes
2 replies
943 views
database of cancer and normal cell lines
rna-seq
updated by GenoMax GenoMax • written by yueli7 yueli7
0 votes
0 replies
469 views
vaxign-ml docker
vaxign-ml docker vaxign
written by chopinone • chopinone
0 votes
11 replies
3.0K views
Seeking a tool for enrichment of a small list of ranked genes
enrichment
written by Aspire Aspire
0 votes
6 replies
2.0K views
Estimate error-rate and assembly oftion for FLYE assembler
flye assembly genome error-rate nanopore
written by SomeOne • SomeOne
0 votes
1 reply
1.2K views
How many genes is required for ORA analysis?
ora deseq single-cell
updated by Ram Ram • written by carolofharvest • carolofharvest
0 votes
5 replies
2.1K views
Difficulties to assess bulk RNA-seq results
dupradar nf-core rnaseq rseqc intron
updated by i.sudbery i.sudbery • written by charles.chapus • charles.chapus
0 votes
3 replies
946 views
best practices for single-cell analysis across more samples???
single-cell
updated by ATpoint ATpoint • written by GiV17 • GiV17
0 votes
2 replies
940 views
Where to find all genes and their biotypes?
biotype genes ensembl
updated by GenoMax GenoMax • written by DN99 • DN99
0 votes
0 replies
899 views
Comparison of ssGSEA scores across different datasets
ssgsea gsea rna-seq
written by james.zhang20 • james.zhang20
0 votes
2 replies
994 views
Rank in rGFA files
gfa rgfa
written by tsnorri • tsnorri
0 votes
0 replies
375 views
Expected ranges for Rosetta scoring values
rosetta
written by Quang • Quang
0 votes
1 reply
1.1K views
Gam format specification
pangenome gam vg
updated by Jouni Sirén Jouni Sirén • written by guntul • guntul
0 votes
0 replies
380 views
read mapping coverage
homoeologous exchange
written by vinita14ramtekey • vinita14ramtekey
0 votes
1 reply
650 views
Intergenic annotation
intergenic annotation
updated by lieven.sterck lieven.sterck • written by Muhammad • Muhammad
0 votes
6 replies
1.7K views
Help with seqkit sort increasing file size in multifasta
fasta multifasta seqkit
updated by GenoMax GenoMax • written by FJCF • FJCF
0 votes
2 replies
1.4K views
TruSight Oncology 500 ctDNA v2 bed file
oncology trusight ctdna 500 v2
written by 1769mkc 1769mkc
0 votes
1 reply
852 views
Normalization and Comparison Methods across Gene Expression Data
expression statistics breast-cancer normalization
updated by Ram Ram • written by Siqi • Siqi
0 votes
5 replies
1.7K views
KEGG pathways
kegg pathways gene_products
written by mrashad mrashad
1 vote
1 reply
769 views
Pangenome alignment tools
pangenome alignment
updated by GenoMax GenoMax • written by Uveyik • Uveyik
0 votes
1 reply
708 views
Pfam database score filtering
pfam enrichment
updated by biofalconch biofalconch • written by ijarne • ijarne
0 votes
2 replies
947 views
Handling of genes with multiple entries in ENSEMBL
rna-seq ensembl
written by marionette.kent • marionette.kent
0 votes
4 replies
1.2K views
Gene locus and gene ID
lncrna
updated by GenoMax GenoMax • written by zizigolu zizigolu
0 votes
2 replies
1.5K views
News: Online Workshop - A Practical Introduction to NGS Data Analysis (December 9-11, 2024)
workshop variant-calling rna-seq illumina dna-seq
written by ecSeq Bioinformatics • ecSeq Bioinformatics
0 votes
4 replies
1.3K views
OTU reads in no template control (NTC)
illumina 16s
updated by GenoMax GenoMax • written by 1769mkc 1769mkc
0 votes
2 replies
1.2K views
Question about seqkit sort function
fasta multifasta seqkit
updated by shenwei356 shenwei356 • written by FJCF • FJCF
0 votes
2 replies
1.3K views
how do you open a networks file which gets from the Cytoscape by using python package networkx?
python cytoscape networkx
updated by Ram Ram • written by 雨 • 雨
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