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0 votes
2 replies
1.2K views
Spatial correlation between two continuous variables
spatial transcriptomics correlation
updated by dsull 781 • | written by hossiny 0
1 vote
6 replies
1.8K views
IGV is not showing all alignments of SAM file
igv
written by gernophil 15
0 votes
6 replies
1.8K views
Multimapping Reads to be counted or not
lowcounts featurecounts rnaseq multimapping
updated by GenoMax 16K • | written by rajdeepboral00 7
3 votes
2 replies
1.4K views
How Can Pathway Analysis Methods Account for Genes with Different Activation Roles?
gsea functional-analysis pathway-enrichment
updated by GenoMax 16K • | written by RoyBatty 3
0 votes
1 reply
1.0K views
tRNA nomenclature / numbering conventions
trna rnaseq
updated by microfuge 197 • | written by noodle 65
0 votes
2 replies
1.1K views
Where can I get gtf file for Adenovirus 5?
gtf files virus
written by new 1
0 votes
6 replies
3.3K views
Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
10x scrna-seq stranded
updated by dsull 781 • | written by mk 31
0 votes
2 replies
847 views
The quality of the linear reference genome used for constructing a pan-genome
cactus-minigraph
written by chiyong4783 0
0 votes
6 replies
2.6K views
Convert RNASeq V2 data in cBioPortal having RSEM normalized results to TPM values
tpm rna-seq cbioportal rsem
updated by Sachin 0 • | written by shakyaram079 0
0 votes
0 replies
629 views
Mutational Signatures, General Standard Refit, Cosine similarity
standard refit selected in signatures
written by shakyaram079 0
0 votes
1 reply
1.8K views
Dorado for m6A modification detection
dorado m6a nanopore
updated by GenoMax 16K • | written by baibhu1234 6
0 votes
17 replies
4.2K views
The BUSCO assessment of the MAKER annotation results shows a low completeness
busco maker
updated by Michael Dondrup 5.6K • | written by mut 0
0 votes
2 replies
1.2K views
Create custom references for Macaca fascicularis using Cellranger -arc
fascicularis references cellranger macaca custom -arc
written by tranhangk15cnsh 0
0 votes
4 replies
1.8K views
vg mod changes a graph, but what about a gam or gamp to the original graph?
vg
updated by Jordan M Eizenga 78 • | written by joseph.fass 1
0 votes
3 replies
1.3K views
Getting an Expression Matrix from GDC Manifest File
rnaseq
updated by Zhenyu Zhang 130 • | written by cthangav 11
0 votes
5 replies
3.0K views
Scale-free topology fit index WGCNA
unsigned signed wgcna
updated by andres.firrincieli 412 • | written by anon 0
0 votes
2 replies
1.1K views
RNA seq analysis in R
r pca heatmap
updated by jared.andrews07 1.9K • | written by anasjamshed 14
3 votes
0 replies
26K views
Herald: The Biostar Herald for Thursday, December 05, 2024
herald
written by Biostar 380
0 votes
0 replies
534 views
How to get the differential abundant taxa of the first time point in time series analysis
lrt
written by leranwangcs 15
0 votes
2 replies
1.2K views
Sequence duplication in fastqc
fastqc duplication rnaseq
written by rajdeepboral00 7
0 votes
6 replies
2.5K views
Forum: How do I start my journey as bioinformatics?
student education career bioinformatics programming
updated by jared.andrews07 1.9K • | written by khumza050 0
0 votes
1 reply
918 views
Mice DEGs for SBGNview plot
sbgnview rna-seq degs mice
updated by theodore 14 • | written by alwayshope 4
0 votes
4 replies
5.2K views
Motif Scanning: HOMER vs MEME, settings?
homer fimo
updated by LChart 518 • | written by mb 0
0 votes
9 replies
3.3K views
Best Approach to Identify Human-C. elegans Orthologs?
c.elegans orthologs homologs genomics
written by bioinformatics_rk 1
1 vote
3 replies
977 views
How to retain interactive plots from Glimma in R Markdown HTML Document
r glimma markdown
updated by yura.grabovska 94 • | written by soullevram98 1
0 votes
11 replies
2.6K views
Counts after using feature counts is low
hisat2 featurecounts lowcounts
updated by GenoMax 16K • | written by rajdeepboral00 7
0 votes
3 replies
995 views
samtools reheader error
samtools
updated by aw7 40 • | written by chiyong4783 0
0 votes
0 replies
1.5K views
Job: Postdoctoral Research Associate
postdoc
written by Ta-Chiang 0
0 votes
2 replies
1.5K views
Paired End Data Merging: Before Or After ?
workflow merging paired metagenomics fastq
written by Aytaç 0
0 votes
3 replies
1.5K views
Computational tools for predicting novel substrates for a class of enzymes
substrate catalysis enzyme
updated by hakimbazol 6 • | written by yarrowmadrona 1
0 votes
2 replies
958 views
abra2 error java.lang.NumberFormatException
abra2 pangenome java
written by chiyong4783 0
0 votes
4 replies
1.6K views
Convert ensembl ids to gene names
r mus musculus
written by anasjamshed 14
0 votes
1 reply
682 views
gene annotation of an eukaryotic organism
gene annotation
updated by francis 28 • | written by rover 0
0 votes
3 replies
1.3K views
contrast matrix design for a continuous variable at multiple groups
design contrast limma
updated by Asaf 1.0K • | written by dtzhu337 1
0 votes
2 replies
871 views
Genome comperison showing unaligned sequence of 70kb in synteny
assembly fungi synteny comperison genome
written by SomeOne 33
0 votes
4 replies
1.9K views
RNA-seq to look at the Effect of Viral Infection
virus deseq2 differential-gene-expression
updated by swbarnes2 1.5K • | written by Nicholas 0
2 votes
0 replies
752 views
Tool: ENA-data brokers, I think you need this...
repository ena broker submission
written by Michael Dondrup 5.6K
0 votes
3 replies
1.1K views
Quantification of RNAseq data
illumina rnaseq
updated by Istvan Albert 10K • | written by ahmedsalahtvi 0
0 votes
3 replies
3.8K views
Ensembl vep GRCh38 cache version
vep cache ensembl gatk
written by sg197 4
1 vote
3 replies
1.8K views
Merging VCF files from different populations
snps alleles gbs merging vcf
written by Armin 1
0 votes
0 replies
413 views
Newbie question on how to use multi2di
multifurcating tree phylogenetic multi2di
written by Stavros 0
0 votes
1 reply
793 views
How to control for UV mutational signature? (for recurrent somatic mutation)
uv somatic-signature melanoma
updated by Sleepy 0 • | written by ConvolutedGenome 6
0 votes
1 reply
854 views
Blog: Novogene Single-cell and Spatial Multi-omics Case Study -Hematological Oncology Research and Application
multi-omics single-cell
updated by KABILAN 13 • | written by Novogene 54
0 votes
5 replies
1.6K views
Parameter Settings for Haplotype-Aware Aligner
vg
updated by GenoMax 16K • | written by chiyong4783 0
0 votes
1 reply
1.0K views
Retrieve MeSH Unique ID (CUI) from Entrez eFetch
mesh entrez ncbi
updated by GenoMax 16K • | written by MarkEdiger 0
0 votes
4 replies
2.0K views
How does Salmon handle multimapped reads?
rnaseq multimapping nf-core salmon
updated by GenoMax 16K • | written by marionette.kent 0
0 votes
1 reply
1.9K views
How to determine intra-run and inter-run repeatability in statistically sound manner?
validation
updated by LChart 518 • | written by benformatics 426
4 votes
0 replies
757 views
Tool: Introducing Amplicon: AI Nextflow Pipeline Generator
nextflow pipeline ai workflow
written by Semir 6
0 votes
3 replies
1.3K views
Tool: New scRNA-seq analysis software - Web-base - No coding needed
tool cell single analysis scrnaseq software
written by Matt 2
0 votes
12 replies
3.8K views
Problem running scPred
scpred scpredict
updated by Ram 4.5K • | written by Nitin 0
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