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0 votes
0 replies
634 views
How to load series matrix file into SeSAMe or minfi for processing?
sesame geo illumina minfi machine-learning
updated by Ram 4.5K • | written by Junk 0
0 votes
14 replies
7.4K views
Is there anyone who downloaded Azimuth packges?
azimuth scrnaseq
updated by ATpoint 9.1K • | written by kayah 2
0 votes
10 replies
2.7K views
Error in conversion of ensembl to gene names
ensembl biomart
updated by Istvan Albert 10K • | written by anasjamshed 14
1 vote
1 reply
1.1K views
Tool: CellLocator: An Open-Source Tool for Unlocking Deeper Insights from Live-Cell Imaging
open-source deep-learning denoising single-cell incucyte
written by Michael 1
0 votes
5 replies
1.7K views
Which data to choose for correlation examination
correlation wgcna tpm batch spearman
updated by Zhenyu Zhang 130 • | written by lyan125 1
0 votes
12 replies
2.9K views
Transcript coverage 3' bias. Is it really that determining?
mappings transcriptome rna
updated by i.sudbery 2.3K • | written by Amb@r85 1
0 votes
7 replies
1.9K views
Quantify miRNAs from whole transcriptome library (single end, TruSeq, 100bp)
mirna whole-transcriptome-truseq
updated by Ram 4.5K • | written by w.denhollander 0
0 votes
1 reply
1.1K views
comparing STARsolo UMI-based directional deduplication vs umi-tools?
single-cell starsolo deduplication umi-tools
updated by i.sudbery 2.3K • | written by mk 31
0 votes
0 replies
570 views
Prediction of sRNA in FASTA file
fasta prediction srna
written by nashwaabdulrasheed09 0
0 votes
0 replies
555 views
Identification of SSR markers from RNA-seq data
misa ssr-markers data rna-seq
written by Kutti 0
0 votes
9 replies
2.9K views
Super enhancer calling using ROSE for mm39 genome: list index out of range error
chip-seq super-enhancers rose mm39
written by Gayatri 0
0 votes
1 reply
886 views
assembling human mitochondrial genomes with nanopore long reads
ont assembly genome mitochondria nanopore
written by eebloom 11
2 votes
12 replies
9.2K views
how can i download human ribosomal reference ?
rna-seq rrna
updated by tomas4482 43 • | written by sabaghianamir70 7
0 votes
4 replies
1.4K views
How should the order of microbiome data preprocessing be prioritized?
aggregation microbiome preprocess normalization filter
written by ssko 2
0 votes
10 replies
3.7K views
High Detection of Duplication in RNAseq dataset
deduplication rnaseq
updated by i.sudbery 2.3K • | written by karlensberg 0
0 votes
6 replies
2.5K views
What should I do if death cell counts and types biologically important in my single cell data?
scrna cell-death single-cell
updated by i.sudbery 2.3K • | written by carolofharvest 6
0 votes
1 reply
1.8K views
Salmon low mapping rates
reference mapping salmon rna-seq
updated by jnechacov 0 • | written by L.Chang 0
0 votes
3 replies
1.8K views
Removing gDNA contamination from RNA seq data
contamination gdna
updated by i.sudbery 2.3K • | written by yahav.bracha 0
0 votes
2 replies
1.3K views
dorado and modkit for m6A identification
dorado m6a modkit
written by baibhu1234 6
0 votes
0 replies
488 views
cnvkit results with start positions always 0 ?
cnvkit variant-calling
updated by Ram 4.5K • | written by ank 0
0 votes
0 replies
1.0K views
Regression and scaling in scanpy
scanpy
written by bioinfo 19
0 votes
2 replies
1.0K views
Question about metabolic pathway prediction using only DNA sequencing data
metabolism genomics ngs
updated by hakimbazol 6 • | written by Mark 6
0 votes
6 replies
1.7K views
English terms distinguishing genotype allelic nucleotides (T/C) from VCF encoded genotype (0/1)
genotypes vcf
written by Jeremy Leipzig 2.3K
0 votes
0 replies
834 views
How to define a clonotype by its TCR sequencing data with its own structure.
tcr sequencing clonotype scrna
written by diqixiaoyaoer 2
0 votes
2 replies
1.3K views
Getting fasta sequence for a gene
fasta regulatory genome region gene
updated by Istvan Albert 10K • | written by zizigolu 438
0 votes
3 replies
1.3K views
Identification of variants from Spatial Transcriptomics using STARSolo
spatial-transcriptomics star visium
updated by Ram 4.5K • | written by kanika.151 16
0 votes
6 replies
2.6K views
Seurat Mito Prefix Removed from Features
seurat
updated by yura.grabovska 94 • | written by Koki 1
0 votes
1 reply
1.1K views
Is there a way to write a genbank file in R?
r genbank genetics bioconductor
updated by yura.grabovska 94 • | written by Jack 0
0 votes
7 replies
2.7K views
Forum: How people usually perform scRNA Seq Analysis on HPC?
hpc single-cell cluster scrna-seq
updated by Ram 4.5K • | written by Tundup 1
0 votes
2 replies
1.8K views
Is it possible to get the percentage identity between a pair of orthologs at the proteome level with the Orthology Matrix (OMA)?
oma sequence-identity
updated by Ram 4.5K • | written by fcampbel 0
0 votes
9 replies
2.0K views
Can we construct single pangenome for different crops
pangenome different crops
updated by b.contreras.moreira 49 • | written by Bushra Bibi 8
0 votes
0 replies
516 views
For RNAseq GSA analysis with unique rodent species
goenrichment rnaseq gsa hypergeometrictest apodemus
written by ohtang7 4
1 vote
4 replies
1.6K views
heterozygous variant on the X chromosome
xchrom variant vcf heterozygous
written by ashaneev07 5
0 votes
4 replies
2.1K views
m6A modification prediction using Nanopore DRS data (RNA004)
m6a drs nanopore
written by baibhu1234 6
0 votes
9 replies
2.1K views
Database like Cellxgene for well-annotated atlas
mapping reference
updated by ATpoint 9.1K • | written by zhai 0
0 votes
1 reply
813 views
Insert sequence in plasmid (plasmidid)
plasmidid insert wgs
updated by Pierre Lindenbaum 17K • | written by aLex97 1
0 votes
2 replies
1.2K views
How to remove pseudo genes from a list
expression gene differential names
written by Meghan.T 1
0 votes
7 replies
2.0K views
DESeq2 normalizing against two baselines
normalization deseq2 rnaseq
updated by Devon Ryan 10K • | written by seaweed96 0
4 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, December 09, 2024
herald
written by Biostar 380
0 votes
4 replies
1.4K views
Split Visium spatial fastq according to barcodes
spatial visium barcodes fastq
written by ThaiosX195 1
0 votes
3 replies
1.1K views
Public databases and raw counts
normalisation counts databases
updated by Istvan Albert 10K • | written by Luka 0
0 votes
1 reply
872 views
Python methylation position visualisation
python plotting visualisation help methylation
updated by dthorbur 350 • | written by gmodlovver 0
1 vote
3 replies
1.5K views
Can I trust this script I wrote for assembling plant genomes?
assembly genome. script plant genomics
updated by Michael Dondrup 5.6K • | written by breri 1
0 votes
1 reply
1.1K views
Help using enricher function from clusterProfiler
r clusterprofiler ora enrichment
updated by yura.grabovska 94 • | written by FJCF 0
0 votes
0 replies
785 views
STAR pair-end gene count discrepancy vs. RSEM
star genecount rsem htseq illumina
written by anon 0
0 votes
2 replies
977 views
linear pangenome for crops
pangenome linear
updated by Sony Nguyen 2 • | written by Bushra Bibi 8
0 votes
2 replies
1.6K views
model interaction in DeSeq2 with >1K samples
deseq2 interaction large sample set design
updated by i.sudbery 2.3K • | written by L.Grigoreva 0
0 votes
2 replies
956 views
Single Copy lncRNA
lncrna single copy
written by Kutti 0
0 votes
6 replies
1.9K views
Concatenating all unmapped or alternative contigs in a reference genome
contigs fasta reference
updated by Semir 6 • | written by manikin_python9f 2
0 votes
1 reply
1.3K views
log transformation before imputation (impute.knn) in proteomic data?
proteomic log_transformation impute.knn
updated by KABILAN 13 • | written by Lila M 130
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