Python methylation position visualisation
I have a polars df that holds the positions of methylated DNA. The structure of the dataframe is the following:
chr,start,end,group
chr1,255,257,control_group_1
I need to take this data, given by a third party And put it into a panel-based dashboard. What are some good, informative ways to visualize this? i have about 24 million rows of data, which is quite a lot. But i have never worked with this kind of data before.
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gmodlovver •
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This is a very difficult question to answer without knowing what you are trying to highlight about the data. That said, there are a few common plots in genome-wide methylation studies. A Manhattan-style plot is good to show overall methylation patterns, and if you want you can put it into a circos plot and include lots of other data.