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Amr
Amr
Reputation:
180
Joined:
5.7 years ago
Last seen:
10 months ago
Location:
Egypt
Latest posts by user
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Comment: Comment: How to prepare .gct file for GSEA software?
written by Amr • Amr
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1 reply
817 views
When should I use R-MarkDown over R-Script ?
r rscript rmarkdown
updated by ATpoint ATpoint • written by Amr • Amr
0 votes
1 reply
969 views
Can I perform ANOVA test on rlog data of RNA sequencing counts?
rlog anova
updated by andres.firrincieli andres.firrincieli • written by Amr • Amr
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1 reply
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Comment: Comment: What is the difference between vst and rlog to perform PCA ?
written by Amr • Amr
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3 replies
2.1K views
What is the difference between vst and rlog to perform PCA ?
rlog pca vsd
updated by ATpoint ATpoint • written by Amr • Amr
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0 replies
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Comment: Comment: t-test to check if the cancer samples are significantly different than the norma
written by Amr • Amr
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1 reply
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Comment: Comment: t-test to check if the cancer samples are significantly different than the norma
written by Amr • Amr
0 votes
1 reply
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Comment: Comment: t-test to check if the cancer samples are significantly different than the norma
written by Amr • Amr
0 votes
6 replies
2.1K views
t-test to check if the cancer samples are significantly different than the normal samples using R
t-test independent
written by Amr • Amr
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
written by Amr • Amr
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1 reply
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Comment: Comment: What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's
written by Amr • Amr
2 votes
6 replies
4.7K views
What does it mean in GSEA when HALLMARK_UV_RESPONSE_DN is upregulated ? how it's down and upregulated?
gsea hallmark
written by Amr • Amr
1 vote
0 replies
627 views
How can two contradicted gene sets be enriched in a cancer sample in GSEA analysis?
hallmark_uv_response_up gsea
updated by ATpoint ATpoint • written by Amr • Amr
0 votes
1 reply
1.1K views
Why we check adjusted p-value not p-value to check whether we reject the null hypothesis or not in DESeq2?
p-value deseq2
updated by ATpoint ATpoint • written by Amr • Amr
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0 replies
722 views
KEGG Pathway pathway in cancer
cancer kegg
written by Amr • Amr
0 votes
2 replies
1.2K views
Can I get the read length from the count data file in R? How?
read_length sequencing
updated by seidel seidel • written by Amr • Amr
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1 reply
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Comment: Comment: How to filter genes inside a normalized count data file based on p-adjust value?
written by Amr • Amr
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1 reply
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Comment: Comment: How to filter genes inside a normalized count data file based on p-adjust value?
written by Amr • Amr
0 votes
1 reply
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Comment: Comment: How to filter genes inside a normalized count data file based on p-adjust value?
written by Amr • Amr
0 votes
7 replies
2.0K views
How to filter genes inside a normalized count data file based on p-adjust value?
normalization p-value deseq2
updated by Ram Ram • written by Amr • Amr
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