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0 votes
6 replies
1.7K views
Could someone send me CISA software ?
cisa
written by lu_baicheng 0
0 votes
2 replies
1.1K views
Circos
visualisation circos
updated by microfuge 197 • | written by Ahashan 0
0 votes
2 replies
1.2K views
RPKM value interpretation
rpkm gene-expression
updated by rfran010 174 • | written by ymd56731 1
0 votes
2 replies
1.4K views
Correcting ONT reads - Alternative to vechat?
ont correction
updated by colindaven 844 • | written by Crying_monkey 0
3 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, December 16, 2024
herald
updated by dariober 1.5K • | written by Biostar 380
0 votes
7 replies
2.6K views
Blast with variable number of Ns
blast
updated by lieven.sterck 1.6K • | written by samuel.himes 0
0 votes
1 reply
743 views
Clinvar contig
clinvar funcotator
updated by Pierre Lindenbaum 17K • | written by Phuc Dinh 0
0 votes
4 replies
1.3K views
Extract aligned positions from reads
samtools target-sequence sequencing genomic-coordinates
written by María José 1
0 votes
1 reply
1.1K views
Differentiate CLR and Hifi readings in datasets
pacbio long-reads nanopore minimap2
updated by GenoMax 16K • | written by María José 1
0 votes
0 replies
589 views
long time on "INFO: Gathering graphs from forest." before getting the run killed.
structural whamg wham variants wgs
written by thomas.heigl.ibk 2
0 votes
2 replies
1.1K views
Newbie Bioinformatics
beginner career
updated by Ram 4.5K • | written by Genome_Learner 0
0 votes
5 replies
3.1K views
Flye Assembler Nano-Raw vs Nano-HQ options
genome assembly nanopore flye
written by SomeOne 33
0 votes
1 reply
1.1K views
cell deconvolution tool Kassandra
cell deconvolution rnaseq kassandra tpm
updated by ATpoint 9.1K • | written by adR 13
0 votes
0 replies
767 views
News: Course: Multivariate Data Analysis with R and vegan
r vegan statistics multivariate-data-analysis
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
1 reply
1.9K views
Low Salmon mapping rate even after stringent `fastp` (overrepresented GGGG permitted and troublesome Per tile sequence quality & Per base sequence content?)
fastp rnaseq
updated by ATpoint 9.1K • | written by Quang 1
3 votes
3 replies
5.1K views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated by anton.kochkov 0 • | written by Istvan Albert 10K
0 votes
1 reply
785 views
Clustering Challenges in Gene Expression Analysis Using WGCNA
r
updated by andres.firrincieli 412 • | written by NDA 2
0 votes
2 replies
1.1K views
Holstein cow SNP reference haplotype panel with FORMAT and SAMPLES (genome ARS-UCD1.2)
cow holstein snp reference-panel
written by biology.may20 2
1 vote
2 replies
1.2K views
Plant diploid genome, phashed, CLR reads, PECAT
diploid genome phased
written by san96 19
1 vote
2 replies
2.4K views
Clarification on StringTie's `--merge` parameters
stringtie stringtie-merge
updated by cpw 0 • | written by DGTool 30
0 votes
1 reply
636 views
Cluster id conversion into gene names
cluster-4432. cluster-4432.3313
updated by Mensur Dlakic 3.0K • | written by Malik 0
0 votes
8 replies
3.3K views
Tools for Subsampling Paired-End Reads to 25X Coverage ?
paired-end fastq depth sequencing coverage
updated by Mensur Dlakic 3.0K • | written by Sony Nguyen 2
1 vote
3 replies
5.6K views
GeneActivity without Fragments file in Seurat for Integrating scRNA-seq and scATAC-seq
atac fragments geneactivity rna seurat
updated by Mr 0 • | written by el24 5
0 votes
9 replies
4.9K views
hd WGCNA - Preservation statistics (Zsummary & MedianRank)
hdwgcna wgcna
updated by andres.firrincieli 412 • | written by AKypR 1
0 votes
0 replies
668 views
No overlapping contigs problem
virus haplotypecaller gatk
updated by GenoMax 16K • | written by Matheus 0
0 votes
13 replies
3.7K views
undermined fastq and top unknown barcodes
bcl2fastq
updated by GenoMax 16K • | written by 1769mkc 127
0 votes
1 reply
1.1K views
Problem while replicating methylation predicting paper, looking for explanation
bioconductor methylation machine-learning r
updated by cmdcolin 448 • | written by Junk 0
0 votes
0 replies
664 views
ssGSEA cross-species
ssgsea rnaseq tpm gsea
written by georgii.vdovin 0
0 votes
10 replies
2.2K views
Batch correction of two RNA-Seq data sets
deseq2 batch-correction
written by gogeni5529 9
0 votes
0 replies
538 views
Plot meRIP bw data on single RNA
plot merip
updated by Ram 4.5K • | written by jia 0
1 vote
1 reply
1.6K views
Optimal Method for Chain File Generation: BLAT vs Minimap2 and MAF2Chain vs axtChain
generation paf2chain axtchain tool chain
updated by cmdcolin 448 • | written by myoui3122010 3
0 votes
7 replies
3.4K views
Which method should I use to merge scRNA-seq data, Cellranger aggr or Seurat?
scrna-seq cellranger hdwgcna seurat
written by Apprentice 19
0 votes
0 replies
523 views
Clonality dendrogram evolution
clonality clonevol dendrogram
written by alba 1
0 votes
1 reply
2.2K views
What laptop specifications should I consider as a Bioinformatics PhD student with HPC access?
laptop hpc cluster
updated by Ram 4.5K • | written by Tundup 1
0 votes
1 reply
631 views
VCF Merge
vcf mergestr
updated by Pierre Lindenbaum 17K • | written by Muhammad 0
0 votes
4 replies
1.6K views
Script that should show if the position of an indel is within the range of a miRNA is creating empty files. Could you help me?
mirna indel
written by jhonatan.henrique 4
1 vote
2 replies
1.6K views
Issues with RAT in CAT_pack and Optimizing Relative Abundance Calculation
metagenomics taxonomy mag annotation
written by LuciaNhu 2
0 votes
2 replies
1.2K views
Hi-C interactions significance
chromatin interactions pvalue hi-c significance
updated by kalavattam 85 • | written by Helena 0
0 votes
4 replies
1.6K views
Conceptual and statistical help in creating a synthetic RNAseq cohort from a real-world cohort of samples
statistics deseq2 rnaseq
updated by ATpoint 9.1K • | written by K.patel5 15
0 votes
0 replies
620 views
StringTie error
de rna-seq stringtie
updated by Ram 4.5K • | written by SHN 4
0 votes
0 replies
517 views
A problem with a plink file made from a VCF
plink vcf
written by HoWI 0
0 votes
2 replies
1.1K views
Annotating bacterial intergenic regions
bacteria gene intergenic annotation
updated by dthorbur 350 • | written by Gio 2
0 votes
0 replies
505 views
KEGGREST to retrieve some data from KEGG
genes kegglink
written by mrashad 9
0 votes
1 reply
876 views
Creating adjacency matrix from collapsed row values in R
adjacency reshape2 matrix r
written by ARP 1
0 votes
5 replies
1.6K views
Deducing AIRR-seq Library Generation From SRA Data
generation sra airflow primer airrflow
written by A Soggy Waffle 0
0 votes
1 reply
868 views
BWA align in human and parasite genome, and sort them
bwa
updated by GenoMax 16K • | written by Bender 0
0 votes
3 replies
1.2K views
Use of "grep" in RNAseq trimming
rnaseq polya
updated by GenoMax 16K • | written by Luna_1215 0
0 votes
1 reply
836 views
No change in quality score graph even after adapter removal
rna-seq fastqc trimmomatic
updated by dsull 781 • | written by Luna 0
2 votes
1 reply
966 views
Regarding ClinVar's VCF file
matrix disease vcf clinvar gene
updated by Jeremy Leipzig 2.3K • | written by singhankit973 2
0 votes
10 replies
2.4K views
Single-cell dimensionality reduction and clustering
seurat
updated by ATpoint 9.1K • | written by xingyu 1
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