This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
2 replies
1.4K views
Paired End Data Merging: Before Or After ?
workflow merging paired metagenomics fastq
written by Aytaç • Aytaç
0 votes
3 replies
1.5K views
Computational tools for predicting novel substrates for a class of enzymes
substrate catalysis enzyme
updated by hakimbazol • hakimbazol • written by yarrowmadrona • yarrowmadrona
0 votes
2 replies
950 views
abra2 error java.lang.NumberFormatException
abra2 pangenome java
written by chiyong4783 • chiyong4783
0 votes
4 replies
1.6K views
Convert ensembl ids to gene names
r mus musculus
written by anasjamshed anasjamshed
0 votes
1 reply
672 views
gene annotation of an eukaryotic organism
gene annotation
updated by francis francis • written by rover • rover
0 votes
3 replies
1.3K views
contrast matrix design for a continuous variable at multiple groups
design contrast limma
updated by Asaf Asaf • written by dtzhu337 • dtzhu337
0 votes
2 replies
862 views
Genome comperison showing unaligned sequence of 70kb in synteny
assembly fungi synteny comperison genome
written by SomeOne • SomeOne
0 votes
4 replies
1.9K views
RNA-seq to look at the Effect of Viral Infection
virus deseq2 differential-gene-expression
updated by swbarnes2 swbarnes2 • written by Nicholas • Nicholas
2 votes
0 replies
724 views
Tool: ENA-data brokers, I think you need this...
repository ena broker submission
written by Michael Dondrup Michael Dondrup
0 votes
3 replies
1.1K views
Quantification of RNAseq data
illumina rnaseq
updated by Istvan Albert Istvan Albert • written by ahmedsalahtvi • ahmedsalahtvi
0 votes
3 replies
3.7K views
Ensembl vep GRCh38 cache version
vep cache ensembl gatk
written by sg197 • sg197
1 vote
3 replies
1.7K views
Merging VCF files from different populations
snps alleles gbs merging vcf
written by Armin • Armin
0 votes
0 replies
406 views
Newbie question on how to use multi2di
multifurcating tree phylogenetic multi2di
written by Stavros • Stavros
0 votes
1 reply
790 views
How to control for UV mutational signature? (for recurrent somatic mutation)
uv somatic-signature melanoma
updated by Sleepy • Sleepy • written by ConvolutedGenome • ConvolutedGenome
0 votes
1 reply
839 views
Blog: Novogene Single-cell and Spatial Multi-omics Case Study -Hematological Oncology Research and Application
multi-omics single-cell
updated by KABILAN • KABILAN • written by Novogene • Novogene
0 votes
5 replies
1.6K views
Parameter Settings for Haplotype-Aware Aligner
vg
updated by GenoMax GenoMax • written by chiyong4783 • chiyong4783
0 votes
1 reply
1.0K views
Retrieve MeSH Unique ID (CUI) from Entrez eFetch
mesh entrez ncbi
updated by GenoMax GenoMax • written by MarkEdiger • MarkEdiger
0 votes
4 replies
2.0K views
How does Salmon handle multimapped reads?
rnaseq multimapping nf-core salmon
updated by GenoMax GenoMax • written by marionette.kent • marionette.kent
0 votes
1 reply
1.9K views
How to determine intra-run and inter-run repeatability in statistically sound manner?
validation
updated by LChart LChart • written by benformatics benformatics
4 votes
0 replies
721 views
Tool: Introducing Amplicon: AI Nextflow Pipeline Generator
nextflow pipeline ai workflow
written by Semir • Semir
0 votes
3 replies
1.3K views
Tool: New scRNA-seq analysis software - Web-base - No coding needed
tool cell single analysis scrnaseq software
written by Matt • Matt
0 votes
12 replies
3.8K views
Problem running scPred
scpred scpredict
updated by Ram Ram • written by Nitin • Nitin
0 votes
2 replies
3.8K views
What is the difference between the SCT data stored in data and scale.data in Seurat?
ngs seurat scrna-seq
written by zhang616123 • zhang616123
0 votes
2 replies
2.2K views
Can't update ClusterProfiler to 4.12.6
r clusterprofiler
updated by ATpoint ATpoint • written by Francois Piumi • Francois Piumi
0 votes
0 replies
674 views
Merging multiple samples Copy number variation file and annotating
cancer annotation germline somatic cnv
written by Anitha • Anitha
0 votes
1 reply
835 views
SRA-Submission query (BioProject)
ngs raw sra data
updated by GenoMax GenoMax • written by adarsh • adarsh
0 votes
2 replies
1.7K views
Job: Looking for a mentor in bioinformatics with animal selection specialization
selection. animal bioinformatics. mentor.
written by biology.may20 • biology.may20
1 vote
6 replies
9.6K views
How to convert maf to vcf while retaining original mutation notations?
vcf maf
updated by RUBA • RUBA • written by steve steve
2 votes
1 reply
1.2K views
News: Course on Manuel Genome Curation using PretextView (Online)
hi-c genome-assembly manuel-curation pretextview
updated by shinken123 shinken123 • written by Physalia-courses Physalia-courses
1 vote
0 replies
663 views
Tool: STRprofiler: efficient comparisons of short tandem repeat profiles for biomedical model authentication
xenograft cell-line model-authentication str-profiling short-tandem-repeats
written by jared.andrews07 jared.andrews07
1 vote
2 replies
1.7K views
best practices for integrating
scrna-seq integration
updated by yura.grabovska • yura.grabovska • written by Nal23 • Nal23
0 votes
0 replies
763 views
Determining Primary, Intermediate, and Mature Mitochondrial Transcripts, and Inferring mtRNA Gene Boundaries
mitogenome pacbio rna-seq transcript primary_transcripts identification primary
written by hashim.rana11 • hashim.rana11
0 votes
3 replies
1.5K views
Converting metadata.csv file into seurat object
scrna-seq analysis
updated by jared.andrews07 jared.andrews07 • written by iqra • iqra
0 votes
0 replies
591 views
Help in understanding metadata in TCGA skin cancer RangedSummarizedExperiment
metadata t tcga
written by Lexi • Lexi
1 vote
5 replies
1.9K views
snRNA-seq of the healthy human brain
python scanpy anndata single-cell
updated by LChart LChart • written by AlexStar • AlexStar
0 votes
10 replies
7.6K views
Forum: insert figure and code in the post of Biostars?
meta biostars
updated by Saeed • Saeed • written by Zhilong Jia Zhilong Jia
0 votes
5 replies
1.6K views
How can I plot a step graph in R?
recurrence step-graph survival
updated by GenoMax GenoMax • written by prithvi.mastermind • prithvi.mastermind
0 votes
4 replies
1.5K views
GO analysis
ggplot2 enrichment go analysis
updated by GenoMax GenoMax • written by Saeed • Saeed
0 votes
2 replies
1.2K views
ATACseq Data Insert Size Plot
insertsize atac-seq picard
written by lingjun meng • lingjun meng
2 votes
8 replies
4.1K views
Variant Caller for Bacterial Amplicon Sequenced with Nanopore
bacterial-genome variant-calling nanopore amplicon-sequencing
updated by colindaven colindaven • written by gtiegs • gtiegs
0 votes
4 replies
1.8K views
Has anyone tried absence or presence heatmap ? (Or suggestion)
r absence heatmap grouping
updated by KABILAN • KABILAN • written by ohtang7 • ohtang7
0 votes
2 replies
959 views
Using cutadapt for phased primer cleaning
trimming
written by 1769mkc 1769mkc
0 votes
2 replies
1.0K views
Can I use FDR twice for multiple correction in a two-stage study using omics data.
statistical omics-data testing rna-seq
written by Apprentice Apprentice
0 votes
1 reply
1.4K views
CUT&RUN spike in normalization in differential binding analysis (with replicates).
cutandrun spikein. differentialbinding csaw
updated by ATpoint ATpoint • written by koleilat.karim • koleilat.karim
0 votes
2 replies
1.3K views
Finding homologous sequences that have crystal structures
proteins genes sequences homologs blast
updated by Dunois • Dunois • written by Hansen_869 • Hansen_869
0 votes
2 replies
1.0K views
Tool: Introducing SnakeMake.IO – Enhancing Snakemake Workflow Management
snakemake
updated by tim.booth • tim.booth • written by snakemakeioapp • snakemakeioapp
0 votes
7 replies
2.5K views
Can germline callers detect somatic variants? (RNAseq, cancer, no matched normal)
germline somatic rna-seq mutect2 deepvariant
written by don • don
0 votes
5 replies
1.9K views
How can I know exactly what the features of members of B gene family have and what their domains and motifs are?
family domain protein
updated by lieven.sterck lieven.sterck • written by El-32 • El-32
0 votes
0 replies
385 views
mutated vs wild type DEG analysis using TCGAbiolinkers for COAD data
tcgabiolinkers
written by RUBA • RUBA
2 votes
5 replies
6.4K views
Differential Gene Expression Analysis using data_RNA_Seq_v2_expression_median RSEM.Normalized
rna-seq limma r dge
updated by RUBA • RUBA • written by gokce.ouz gokce.ouz
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