Hello, i'm newbie to bioinformatics and gatk and currently studying When i annotate VCF with Funcotator, VCF file generate by gatk has contig is chr1, chr2,... but file clinvar.vcf.gz is ID=1,2,3... The result is clinvar information about the variant is missing. I wanna ask about the problem that when i gunzip clinvar.vcf.gz to clinvar.vcf, ##contig .... lines completely disappear from clinvar.vcf. how can i solve this problem? Thank you very much.