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0 votes
7 replies
2.7K views
Forum: How people usually perform scRNA Seq Analysis on HPC?
hpc single-cell cluster scrna-seq
updated by Ram Ram • written by Tundup • Tundup
0 votes
2 replies
1.8K views
Is it possible to get the percentage identity between a pair of orthologs at the proteome level with the Orthology Matrix (OMA)?
oma sequence-identity
updated by Ram Ram • written by fcampbel • fcampbel
0 votes
9 replies
1.9K views
Can we construct single pangenome for different crops
pangenome different crops
updated by b.contreras.moreira • b.contreras.moreira • written by Bushra Bibi Bushra Bibi
0 votes
0 replies
508 views
For RNAseq GSA analysis with unique rodent species
goenrichment rnaseq gsa hypergeometrictest apodemus
written by ohtang7 • ohtang7
1 vote
4 replies
1.6K views
heterozygous variant on the X chromosome
xchrom variant vcf heterozygous
written by ashaneev07 • ashaneev07
0 votes
4 replies
2.1K views
m6A modification prediction using Nanopore DRS data (RNA004)
m6a drs nanopore
written by baibhu1234 • baibhu1234
0 votes
9 replies
2.1K views
Database like Cellxgene for well-annotated atlas
mapping reference
updated by ATpoint ATpoint • written by zhai • zhai
0 votes
1 reply
792 views
Insert sequence in plasmid (plasmidid)
plasmidid insert wgs
updated by Pierre Lindenbaum Pierre Lindenbaum • written by aLex97 • aLex97
0 votes
2 replies
1.2K views
How to remove pseudo genes from a list
expression gene differential names
written by Meghan.T • Meghan.T
0 votes
7 replies
2.0K views
DESeq2 normalizing against two baselines
normalization deseq2 rnaseq
updated by Devon Ryan Devon Ryan • written by seaweed96 • seaweed96
4 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, December 09, 2024
herald
written by Biostar Biostar
0 votes
4 replies
1.4K views
Split Visium spatial fastq according to barcodes
spatial visium barcodes fastq
written by ThaiosX195 • ThaiosX195
0 votes
3 replies
1.1K views
Public databases and raw counts
normalisation counts databases
updated by Istvan Albert Istvan Albert • written by Luka • Luka
0 votes
1 reply
866 views
Python methylation position visualisation
python plotting visualisation help methylation
updated by dthorbur dthorbur • written by gmodlovver • gmodlovver
1 vote
3 replies
1.5K views
Can I trust this script I wrote for assembling plant genomes?
assembly genome. script plant genomics
updated by Michael Dondrup Michael Dondrup • written by breri • breri
0 votes
1 reply
1.0K views
Help using enricher function from clusterProfiler
r clusterprofiler ora enrichment
updated by yura.grabovska • yura.grabovska • written by FJCF • FJCF
0 votes
0 replies
778 views
STAR pair-end gene count discrepancy vs. RSEM
star genecount rsem htseq illumina
written by anon • anon
0 votes
2 replies
960 views
linear pangenome for crops
pangenome linear
updated by Sony Nguyen • Sony Nguyen • written by Bushra Bibi Bushra Bibi
0 votes
2 replies
1.5K views
model interaction in DeSeq2 with >1K samples
deseq2 interaction large sample set design
updated by i.sudbery i.sudbery • written by L.Grigoreva • L.Grigoreva
0 votes
2 replies
947 views
Single Copy lncRNA
lncrna single copy
written by Kutti • Kutti
0 votes
6 replies
1.9K views
Concatenating all unmapped or alternative contigs in a reference genome
contigs fasta reference
updated by Semir • Semir • written by manikin_python9f • manikin_python9f
0 votes
1 reply
1.3K views
log transformation before imputation (impute.knn) in proteomic data?
proteomic log_transformation impute.knn
updated by KABILAN • KABILAN • written by Lila M Lila M
0 votes
2 replies
1.2K views
Spatial correlation between two continuous variables
spatial transcriptomics correlation
updated by dsull dsull • written by hossiny • hossiny
1 vote
6 replies
1.8K views
IGV is not showing all alignments of SAM file
igv
written by gernophil • gernophil
0 votes
6 replies
1.7K views
Multimapping Reads to be counted or not
lowcounts featurecounts rnaseq multimapping
updated by GenoMax GenoMax • written by rajdeepboral00 • rajdeepboral00
3 votes
2 replies
1.4K views
How Can Pathway Analysis Methods Account for Genes with Different Activation Roles?
gsea functional-analysis pathway-enrichment
updated by GenoMax GenoMax • written by RoyBatty • RoyBatty
0 votes
1 reply
979 views
tRNA nomenclature / numbering conventions
trna rnaseq
updated by microfuge microfuge • written by noodle noodle
0 votes
2 replies
1.1K views
Where can I get gtf file for Adenovirus 5?
gtf files virus
written by new • new
0 votes
6 replies
3.3K views
Understanding STARsolo --soloStrand values and 10X scRNA-seq library structure
10x scrna-seq stranded
updated by dsull dsull • written by mk mk
0 votes
2 replies
841 views
The quality of the linear reference genome used for constructing a pan-genome
cactus-minigraph
written by chiyong4783 • chiyong4783
0 votes
6 replies
2.6K views
Convert RNASeq V2 data in cBioPortal having RSEM normalized results to TPM values
tpm rna-seq cbioportal rsem
updated by Sachin • Sachin • written by shakyaram079 • shakyaram079
0 votes
0 replies
615 views
Mutational Signatures, General Standard Refit, Cosine similarity
standard refit selected in signatures
written by shakyaram079 • shakyaram079
0 votes
1 reply
1.8K views
Dorado for m6A modification detection
dorado m6a nanopore
updated by GenoMax GenoMax • written by baibhu1234 • baibhu1234
0 votes
17 replies
4.2K views
The BUSCO assessment of the MAKER annotation results shows a low completeness
busco maker
updated by Michael Dondrup Michael Dondrup • written by mut • mut
0 votes
2 replies
1.2K views
Create custom references for Macaca fascicularis using Cellranger -arc
fascicularis references cellranger macaca custom -arc
written by tranhangk15cnsh • tranhangk15cnsh
0 votes
4 replies
1.8K views
vg mod changes a graph, but what about a gam or gamp to the original graph?
vg
updated by Jordan M Eizenga • Jordan M Eizenga • written by joseph.fass • joseph.fass
0 votes
3 replies
1.3K views
Getting an Expression Matrix from GDC Manifest File
rnaseq
updated by Zhenyu Zhang Zhenyu Zhang • written by cthangav • cthangav
0 votes
5 replies
2.9K views
Scale-free topology fit index WGCNA
unsigned signed wgcna
updated by andres.firrincieli andres.firrincieli • written by anon • anon
0 votes
2 replies
1.1K views
RNA seq analysis in R
r pca heatmap
updated by jared.andrews07 jared.andrews07 • written by anasjamshed anasjamshed
3 votes
0 replies
26K views
Herald: The Biostar Herald for Thursday, December 05, 2024
herald
written by Biostar Biostar
0 votes
0 replies
525 views
How to get the differential abundant taxa of the first time point in time series analysis
lrt
written by leranwangcs • leranwangcs
0 votes
2 replies
1.2K views
Sequence duplication in fastqc
fastqc duplication rnaseq
written by rajdeepboral00 • rajdeepboral00
0 votes
6 replies
2.4K views
Forum: How do I start my journey as bioinformatics?
student education career bioinformatics programming
updated by jared.andrews07 jared.andrews07 • written by khumza050 • khumza050
0 votes
1 reply
910 views
Mice DEGs for SBGNview plot
sbgnview rna-seq degs mice
updated by theodore theodore • written by alwayshope • alwayshope
0 votes
4 replies
5.1K views
Motif Scanning: HOMER vs MEME, settings?
homer fimo
updated by LChart LChart • written by mb • mb
0 votes
9 replies
3.3K views
Best Approach to Identify Human-C. elegans Orthologs?
c.elegans orthologs homologs genomics
written by bioinformatics_rk • bioinformatics_rk
1 vote
3 replies
964 views
How to retain interactive plots from Glimma in R Markdown HTML Document
r glimma markdown
updated by yura.grabovska • yura.grabovska • written by soullevram98 • soullevram98
0 votes
11 replies
2.5K views
Counts after using feature counts is low
hisat2 featurecounts lowcounts
updated by GenoMax GenoMax • written by rajdeepboral00 • rajdeepboral00
0 votes
3 replies
991 views
samtools reheader error
samtools
updated by aw7 • aw7 • written by chiyong4783 • chiyong4783
0 votes
0 replies
1.5K views
Job: Postdoctoral Research Associate
postdoc
written by Ta-Chiang • Ta-Chiang
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