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0 votes
2 replies
1.9K views
How to use artemis comparison tool?
artemis act comparison genomics
updated by GenoMax 16K • | written by marongiu.luigi 79
1 vote
0 replies
850 views
News: Cellosaurus release 51
cellosaurus knowledgebase biocuration cell-line
updated by Ram 4.5K • | written by Amos Bairoch 14
0 votes
3 replies
2.3K views
News: Last Day: Special Deal - 15% Off - RNA-Seq Data Analysis Workshop (March 24 - 27, 2025 in Halle, Germany)
transcriptomics splicing differential-expression rna-seq
written by ecSeq Bioinformatics 9
0 votes
5 replies
2.7K views
Non Variant Sites in GVCF File
gatk vcf snp
updated by Jeremy Leipzig 2.3K • | written by saamhasan55 3
0 votes
8 replies
2.2K views
How to make .fasta file
fasta utrdb
updated by Ram 4.5K • | written by otieno43 4
0 votes
0 replies
594 views
The VCF generated by the pan-genome contains missing values due to conflicts
vg mc
written by chiyong4783 0
1 vote
3 replies
1.7K views
Understanding BWA parameters
bwa
updated by Mark 173 • | written by nicole.leahy 2
0 votes
1 reply
1.2K views
Bonferroni correction for burden by transcripts
association-test statistics
updated by Gordon Smyth 916 • | written by raphael.B 57
0 votes
3 replies
2.0K views
featureCounts problems with GTF generated by myself
featurecounts gtf
updated by GenoMax 16K • | written by soda 6
0 votes
2 replies
1.0K views
Prokka Error
prokka
updated by Mensur Dlakic 3.0K • | written by Maayeesha 0
0 votes
0 replies
708 views
CLIPdb bulk download all RBP binding sites with annotations.
bindingdata rbp bulkdownload clipdb
written by ttcheau 0
0 votes
0 replies
754 views
Maftools and MutationalPatterns tools
maftools mutationalpatterns
updated by Ram 4.5K • | written by shakyaram079 0
0 votes
2 replies
1.4K views
Interpret IGV
flags igv read
written by najim3 0
0 votes
5 replies
1.7K views
Confusion about different IDs
refseq
written by zizigolu 438
0 votes
2 replies
1.6K views
Which pangenome graph (full/clip/filter/sampled) to use when align RNA-seq with mpmap
vg
written by Hanc 1
0 votes
0 replies
674 views
News: Join us in Poland for the Landscape Genomics course in January 2025!
adaptationgenomics sambada r gis landscapegenomics
updated by ATpoint 9.1K • | written by Physalia-courses 281
0 votes
4 replies
3.8K views
cellranger count for multiple samples
cellranger single-cell-transcriptomics 10x
written by Assa Yeroslaviz 197
0 votes
3 replies
1.2K views
problem with 16S reverse reads with low quality
soil amplicon micorbiome sequencing trimmomatic
updated by hakimbazol 6 • | written by michele.lamprillo 0
0 votes
0 replies
641 views
Process localizer (1) terminated with an error exit status (1) predector error
predector fungus
written by Bushra Bibi 8
0 votes
3 replies
1.5K views
BAM to Bedgraph creating an empty file
bisulfite-seq bismark
updated by hpf0210 0 • | written by irebekah.c 0
1 vote
2 replies
1.6K views
Discripancy in miRDeep2.pl and quantifier.pl outputs
mirdeep2
written by otieno43 4
0 votes
0 replies
807 views
Error encountered in clusterSVs function from the script located at MC-paper doc/mc-paper/fly/cluster-svs.R
mc sveval
written by chiyong4783 0
1 vote
7 replies
2.9K views
Extracting nucleotide gene sequence as a single fasta from whole genome data with blastn
blast cds alignment whole-genome
updated by Michael Dondrup 5.6K • | written by Kristen 1
2 votes
0 replies
1.9K views
Tutorial: Fix the "incompatible matrix dimensions" issue in running harmony
harmony rna-seq single-cell
updated by Ram 4.5K • | written by Pei 26
0 votes
0 replies
754 views
Issues with GBS pipeline, samtools and bwa specifically
samtools bwa genotyping linux genomics
written by dimeresia 1
0 votes
0 replies
705 views
ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
methylation epicarray champ
written by André 0
0 votes
0 replies
547 views
umi tools RNA data [transcriptome alignment or genome alignment]
ont umi_tools
written by Shiyi 4
0 votes
3 replies
1.7K views
UMI collapsing in single cell
10x umi single-cell collapse
updated by i.sudbery 2.3K • | written by zbidav 3
0 votes
2 replies
1.2K views
How to compare the gene profile of two organisms (what genes are in common) using genBank?
genes genbank genome comparison
written by marongiu.luigi 79
1 vote
2 replies
1.2K views
Does TCGA data only use host reads to make pre-processed data (CNV, Mutations status, RNA-seq)?
rna-seq copy-number-variation mutation-status tcga
updated by Zhenyu Zhang 130 • | written by yahn 1
1 vote
2 replies
2.9K views
HOMER works incorrectly with -sspe option for paired-end reads
chip-seq homer
updated by Sudarshana 0 • | written by biostart 37
0 votes
4 replies
1.6K views
Pseudoreplicate creation from bam files
chipseq idr shuffle_bam
written by sarahmanderni 13
1 vote
0 replies
823 views
News: Online course: Genome Assembly and Annotation - 17–21 March
genome-assembly genome-annotation long-reads galaxy
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
0 replies
538 views
Are there any tools that support wobble-base pair alignment?
pair wobble-base
written by Renqing 0
0 votes
1 reply
1.1K views
WarningNAs produced by integer overflow error using SCTransform
scrna seurat
updated by Bastien Hervé 680 • | written by Rosie 0
0 votes
4 replies
2.5K views
Unable to integrate separately SCTransformed scRNAseq Seurat Objects
seurat
updated by Ram 4.5K • | written by awsk 0
1 vote
11 replies
4.5K views
Determine type of Pacbio read
sratoolkit clr pacbio hifi long-reads
updated by GenoMax 16K • | written by María José 1
0 votes
1 reply
895 views
Consensus Motif
msa motif
updated by Mensur Dlakic 3.0K • | written by prs 2
0 votes
12 replies
3.5K views
Snakemake-Created Conda Environment Deactivation
linux workflow conda snakemake
updated by Marc 1 • | written by menyawino 0
0 votes
2 replies
1.8K views
Bimodal %GC plot of fastqc output in RNASeq
rice rna-seq illumina fastqc gc
updated by Ram 4.5K • | written by devbt15 3
1 vote
1 reply
948 views
how to calculate gene length for TPM
counts tpm reads
updated by ATpoint 9.1K • | written by adi.gershon1 1
0 votes
2 replies
1.6K views
decoupleR & Transcription Factory Activity Inference: pvalue or padj?
pvalue padj decoupler
updated by Picasa 71 • | written by OST 1
0 votes
0 replies
734 views
News: online course: Generalised Linear Models in R
r generalisedlinearmodels glms
written by Physalia-courses 281
96 votes
110 replies
73K views
Tutorial: Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
1000genomes plink pca
updated by Niharika 0 • | written by Kevin Blighe 9.0K
0 votes
2 replies
1.9K views
DMRcate ranges liftover hg19 to hg38
dmrcate liftover dmr methylation annotation
updated by t.peters 2 • | written by sativus 2
0 votes
0 replies
1.7K views
Job: 2-year Postdoc Fellowship in Bioinformatics of Paleogenomics and AI - Deadline February 1st 2024. Sweden
postdoc ancientdna paleogenetics ai silkroad
updated by colindaven 844 • | written by eranelhaik 3
0 votes
3 replies
1.9K views
Forum: What is meant by referring to research studies as "stories"?
articles science story genomics
updated by ATpoint 9.1K • | written by mcsimenc 3
0 votes
7 replies
2.6K views
10X Genomics Cellranger Transcriptome Alignment for Homo Sapiens and Epstein-Barr virus (EBV) Simuetaneously
ebv cellranger scrna-seq 10x
updated by GenoMax 16K • | written by Wu-Sheng Zhang 1
0 votes
8 replies
2.2K views
How modified GTF file into a BED file with chromosome aware format?
gtf refseq bed
updated by Juke34 949 • | written by mauricio.1313 0
0 votes
4 replies
1.7K views
No gene name
ensembl biomart gene_name deseq2
updated by Dave Carlson 223 • | written by rajdeepboral00 7
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