WarningNAs produced by integer overflow error using SCTransform

Hello all, So I am trying to analyse single cel data using seurat. I am using SCTransform for normalizing and scaling. But when I run

 sct –>SCTransform(mymergedseuratobject), I get error stating "Warning: NAs produced by integer overflowWarning: NAs produced by integer overflowWarning: NAs produced by integer overflowWarning: NAs produced by integer overflowWarning: NAs produced by integer overflowWarning: NAs produced by integer overflowWarning: NAs produced by integer overflowWarning: NAs produced by integer overflow".

I am worried this will have effect on my downstream analysis and give false results. Can someone help me on how this error can be solved? My seuratobject is around 1.2gb. Thank you.

scrna seurat

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updated 1.6 years ago by Bastien Hervé

• written 1.6 years ago by Rosie •

Look at similar issues and try the different answers according to what fit your data.

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written 1.6 years ago by Bastien Hervé

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