I was wondering if it is possible to run cellranger count with multiple samples in one go and get an output folder for each sample separately.

I'm using the following command to run cellranger count

cellranger count --id=10X_V211 \
           --libraries=library.csv \
           --transcriptome=Drerio_genome/ \
           --create-bam=true \
           --output-dir v211_Drerio/

while my library.csv file is this

fastqs,sample,library_type,
fastq_files/,low1,Gene Expression,
fastq_files/,low2,Gene Expression,
fastq_files/,high3,Gene Expression,
fastq_file/,high4,Gene Expression,

But this would treat all the samples as just one and would create just one output file.

Is there a way to handle those samples separately or do I need to run the command for times and use the --fastq and --sample parameters instead?

thanks

Assa