Insert sequence in plasmid (plasmidid)
I have WGS data that includes the genome and plasmid with a gene of interest. How can I identify the insert within the plasmid using bioinformatics tools? I've tried using PlasmidID, but I'm not sure how to interpret the results.
Thank you in advance!
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Pierre Lindenbaum
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aLex97 •
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aLex97 •
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map your wgs data on https://www.ncbi.nlm.nih.gov/tools/vecscreen/univec/ , remove any read mapping on a plasmid, BLAST vs 'nr' the remaining reads ?
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Pierre Lindenbaum
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