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How to identify IDH status (Mutation or WildType) in TCGA LGG/GBM dataset?

Hello everyone, I'm using GBM/LGG Image data downloaded from TCGA. I'm confused by the DNA/RNA sequences. And I can't find mutation status. I want to do some researches about Gliomas, for example, use image data to predict IDH and 1p/19q status.

My questions:

1) How to identify the mutation status of samples ? mutation of interest: IDH1

2) How to identify other gene status of samples ? (MGMT 1P/19Q TP53)

Thank you all in advance :)

tcga mutation idh

2 answers

Sorry guys, I didn't read TCGA's User Guide carefully, Now I understand how to use TCGA correcly.

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