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sg197
sg197
Reputation:
40
Joined:
8.4 years ago
Last seen:
9 months ago
Location:
United Kingdom
Latest posts by user
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Comment: Comment: snpEff custom database not found
written by sg197 • sg197
0 votes
3 replies
1.6K views
snpEff custom database not found
docker snpeff
updated by Arup Ghosh Arup Ghosh • written by sg197 • sg197
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0 replies
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Comment: Comment: Ensembl vep GRCh38 cache version
written by sg197 • sg197
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3 replies
3.7K views
Ensembl vep GRCh38 cache version
vep cache ensembl gatk
written by sg197 • sg197
0 votes
1 reply
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Comment: Comment: DESeq2 model matrix not full rank, potentially confounding factors?
written by sg197 • sg197
0 votes
4 replies
2.1K views
DESeq2 model matrix not full rank, potentially confounding factors?
deseq2 differential-expression rna-seq
updated by Asaf Asaf • written by sg197 • sg197
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0 replies
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Comment: Comment: Count number of unique alignments to each chromosome from sam file
written by sg197 • sg197
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2 replies
1.7K views
Count number of unique alignments to each chromosome from sam file
samtools sort unix uniq sam
written by sg197 • sg197
0 votes
1 reply
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Comment: C: find co-ordinates of overlapping fasta sequences
written by sg197 • sg197
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3 replies
1.6K views
find co-ordinates of overlapping fasta sequences
bedtools fasta micrornas
written by sg197 • sg197
0 votes
0 replies
1.3K views
miRDeep2 sample read count different between mapper.pl and quantifier.pl
mirdeep2 rna-seq microrna
written by sg197 • sg197
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0 replies
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Comment: C: StringTie error input file not sorted, even though it is
written by sg197 • sg197
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1 reply
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Comment: C: StringTie error input file not sorted, even though it is
written by sg197 • sg197
0 votes
4 replies
1.0K views
StringTie error input file not sorted, even though it is
rna-seq stringtie
updated by Ram Ram • written by sg197 • sg197
0 votes
1 reply
0 views
Comment: C: Using StringTie output GTF with featureCounts to assign reads- low assigned perc
written by sg197 • sg197
1 vote
3 replies
3.0K views
Using StringTie output GTF with featureCounts to assign reads- low assigned percentage
rna-seq featurecounts stringtie
updated by Mark Mark • written by sg197 • sg197
1 vote
2 replies
4.0K views
R AnnotationDbi returning NA for pseudogenes during gene id annotation
r annotationdbi pseudogene deseq2 ensembl
updated by Fratam • Fratam • written by sg197 • sg197
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0 replies
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Comment: C: Difference between read counts STAR vs featureCounts
written by sg197 • sg197
1 vote
4 replies
11K views
Difference between read counts STAR vs featureCounts
star featurecounts multimapped rna-seq
updated by h.mon h.mon • written by sg197 • sg197
0 votes
1 reply
2.0K views
Are single-end reads processed the same as paired-end reads regarding strandedness?
rna-seq featurecounts strandedness single-end
updated by ATpoint ATpoint • written by sg197 • sg197
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