RNA seq analysis in R
I have gene expression data from mice, and I want to apply wald test on each dds to compare:
Day 0
- Control vs low
- Control vs high
- High vs low
Day 1
- Control vs low
- Control vs high
- High vs low
Day 3
- Control vs low
- Control vs high
- High vs low
Day 7
- Control vs low
- Control vs high
- High vs low
I already find signficant genes of each condition but the problem is that can I make pca and heatmap of each condition?
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jared.andrews07
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anasjamshed
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Yes? Just limit the samples to those in the comparison of interest. Not sure what the question really is.