gene annotation of an eukaryotic organism
1 answer
What organism? What size?
Please define by what you want to do when you say "annotation of a genome" or "gene annotation".
Have you reached out to the Breaker2 developers?
Looked at Breaker2 tutorials?
https://bioinformaticsworkbook.org/dataAnalysis/GenomeAnnotation/Intro_to_Braker2.html#gsc.tab=0
Have you also considered these other options?
- The NCBI Eukaryotic Genome Annotation Pipeline | https://www.ncbi.nlm.nih.gov/refseq/annotation_euk/process/
- Funannotate | https://funannotate.readthedocs.io/en/latest/
- Maker | https://www.yandell-lab.org/software/maker.html
- Augustus | https://bioinf.uni-greifswald.de/augustus/
Good luck,
Log in to answer this question.
More posts like this
-
DeNovo Assembly - Assigning gene description
written by Sowmya Pulapet •
-
Rna-seq analysis using FASTA file
written by Meghna •
-
Recent GDC Data Updating Parameters
written by Aqsa •
-
Variant annotation using Illumina Basespace Variant Interpreter
written by smrutimayipanda •
-
PAM50 analysis from RNAseq data
written by mmeghana •
-
IDR (Irreproducible Discover Rate) on more than two replicates
written by olechnwin •
-
Aligning two DNA sequences with nBLAST
written by sj93 •
-
Using RNA-seq reads from closely related species in BRAKER2 genome annotation pipeline
written by ayala.usma •
-
Braker output into maker (Annotation)
written by mafireyi •
-
Forum: Eukaryotic Genome Annotation in 2016
written by Eric Normandeau
