Hey Kevin,
Thank you for your response. Will go through the link.
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mmeghana •
PAM50 analysis from RNAseq data
Hello,
I'm analyzing a RNAseq breast cancer data that was sequenced inhouse. I want to classify the samples into their respective subtypes based on PAM50. To do this, I was suggested to use genefu package. I am quite a beginner and I wanted to know the format of required input file and annotation file for genefu package. It would be really helpful if someone could get me through this.
Thank you
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DareDevil
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mmeghana •
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mmeghana •
1 answer
Hey there,
You should first go through the vignette, genefu: a package for breast cancer gene expression analysis, so that you can then better understand the input format that is required.
Kevin
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Kevin Blighe
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