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pragnapcu
pragnapcu
Reputation:
10
Joined:
6.3 years ago
Last seen:
2.3 years ago
Location:
India
Latest posts by user
0 votes
1 reply
984 views
Requesting Insights on Potential Complex Structural Event Indicated by IGV
manta igv variant translocation structural
updated by wakaruszka • wakaruszka • written by pragnapcu • pragnapcu
0 votes
0 replies
0 views
Comment: Comment: Error Reading gencode.v38.genes.json.gz File in SvAnna CLI Tool
written by pragnapcu • pragnapcu
0 votes
2 replies
916 views
Error Reading gencode.v38.genes.json.gz File in SvAnna CLI Tool
structural-variant svanna
written by pragnapcu • pragnapcu
0 votes
0 replies
0 views
Answer: Answer: HaplotypeCaller VCF depth is greater than the number of reads in bam
written by pragnapcu • pragnapcu
0 votes
0 replies
0 views
Comment: Comment: Why the number of reads in bam generated by GATK haplotype caller are more than
written by pragnapcu • pragnapcu
0 votes
2 replies
1.7K views
Why the number of reads in bam generated by GATK haplotype caller are more than the bam generated after GATK baserecalibrator
baserecalibrator bam gatk read haplotypecaller
written by pragnapcu • pragnapcu
0 votes
1 reply
1.3K views
How do I integrate GRCh38 CADD v1.6 offline with ANNOVAR?
cadd v1.6 annovar
updated by barslmn • barslmn • written by pragnapcu • pragnapcu
0 votes
1 reply
0 views
Answer: Answer: How to detect de novo variants with trio-data
written by pragnapcu • pragnapcu
0 votes
0 replies
0 views
Comment: Comment: Why do I see sudden rise in TOTAL COUNT of my bam. I dont think it is duplicatio
written by pragnapcu • pragnapcu
0 votes
0 replies
0 views
Comment: Comment: How Haplotypecaller could call a 17-bp duplication that is not seen in sorted ba
written by pragnapcu • pragnapcu
0 votes
2 replies
0 views
Comment: Comment: How Haplotypecaller could call a 17-bp duplication that is not seen in sorted ba
written by pragnapcu • pragnapcu
0 votes
5 replies
1.6K views
How Haplotypecaller could call a 17-bp duplication that is not seen in sorted bam (in IGV)?
baserecalibrator igv gatk haplotypecaller frameshiftinsertion
written by pragnapcu • pragnapcu
0 votes
0 replies
0 views
Comment: Comment: Why do I see sudden rise in TOTAL COUNT of my bam. I dont think it is duplicatio
written by pragnapcu • pragnapcu
0 votes
4 replies
1.5K views
Why do I see sudden rise in TOTAL COUNT of my bam. I dont think it is duplication?
bam igv gatk duplication
written by pragnapcu • pragnapcu
0 votes
0 replies
0 views
Comment: Comment: How to Visualize unmapped bam generated from GATK FastqToSam?
written by pragnapcu • pragnapcu
0 votes
2 replies
1.2K views
How to Visualize unmapped bam generated from GATK FastqToSam?
fastqtosam unmappedbam gatk
written by pragnapcu • pragnapcu
0 votes
0 replies
866 views
How can I give dbscsv11.txt.gz and dbscsv11.txt.gz.tbi to tableannovar --protocol instead of dbscsv11.txt and dbscsv11.txt.tbi?
dbscsnv gatk annovar
written by pragnapcu • pragnapcu
0 votes
1 reply
0 views
Comment: Comment: gCNVKERNEL Error while using GATK 4.1
written by pragnapcu • pragnapcu
0 votes
1 reply
0 views
Comment: Comment: Why different read depth on IGV and in VCF for a variant
written by pragnapcu • pragnapcu
0 votes
3 replies
2.4K views
Why different read depth on IGV and in VCF for a variant
depth gatk read haplotypecaller igv
updated by Friederike Friederike • written by pragnapcu • pragnapcu
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