Wondering if anyone else is running into this issue. I am attempting to download some tables from ANNOVAR for variant annotation. However, every download command …

Hi, I followed the Annovar tutorial with the default dataset (avsnp147, ExAC and dbnsfp30a). The tutorial can be found here: https://annovar.openbioinformatics.org/en/latest/user-guide/startup/ The resulting vcf contained …

Hi, I have a VCF file of only SNPs. what I wish to do is for every SNP to download the CADD score from here: …

Hello everyone I am working on whole slide imaging data. For this, I am trying to install pipeline available at https://github.com/aetherAI/whole-slide-cnn. All dependency packages are …

I want to determine the top 5 most deleterious variants in the protein coding region of my favorite gene but also want to understand how …

Hello! I am trying to download the S2F2 genome of the planarian S mediterranea here: https://www.ncbi.nlm.nih.gov/nuccore/1267084223 However, I can't download it from that link. The …

I want to download CADD scores (**All possible SNVs of GRCh38/hg38**) from the following webpage: [https://cadd.gs.washington.edu/download][1] However for each download link it says **US | …

When I run the sample command line with sample data for OncodriveFML, I got the error message: (OncodriveFML) kong@cloud-hpc-06-kong:~/Haiying/Projects/PrimaryMelanoma/temp> oncodrivefml -i paad.txt.gz -e cds.regions.gz --type …

I was annotating SNP's with CADD score with dbNFSP. dbNFSP says that its CADD score has been updated to 1.3 version. I tried to annotate …

Hello all, I am doing GSEA analysis. I have done with human successfully. However, this time, I am trying to run with my mouse gene. …