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0 votes
3 replies
1.3K views
Is this featureCounts output normal, and how can I process it for DESeq2 analysis?
rna-seq featurecounts deseq2
updated by Gordon Smyth 916 • | written by DdogBoss 7
0 votes
1 reply
1.5K views
Iterative clustering with silhouette score
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updated by Mensur Dlakic 3.0K • | written by sleepystudent 0
0 votes
2 replies
962 views
database of cancer and normal cell lines
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updated by GenoMax 16K • | written by yueli7 25
0 votes
0 replies
475 views
vaxign-ml docker
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written by chopinone 0
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11 replies
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Seeking a tool for enrichment of a small list of ranked genes
enrichment
written by Aspire 43
0 votes
6 replies
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Estimate error-rate and assembly oftion for FLYE assembler
flye assembly genome error-rate nanopore
written by SomeOne 33
0 votes
1 reply
1.3K views
How many genes is required for ORA analysis?
ora deseq single-cell
updated by Ram 4.5K • | written by carolofharvest 6
0 votes
5 replies
2.2K views
Difficulties to assess bulk RNA-seq results
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updated by i.sudbery 2.3K • | written by charles.chapus 1
0 votes
3 replies
960 views
best practices for single-cell analysis across more samples???
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updated by ATpoint 9.1K • | written by GiV17 5
0 votes
2 replies
973 views
Where to find all genes and their biotypes?
biotype genes ensembl
updated by GenoMax 16K • | written by DN99 2
0 votes
0 replies
916 views
Comparison of ssGSEA scores across different datasets
ssgsea gsea rna-seq
written by james.zhang20 1
0 votes
2 replies
1.0K views
Rank in rGFA files
gfa rgfa
written by tsnorri 0
0 votes
0 replies
375 views
Expected ranges for Rosetta scoring values
rosetta
written by Quang 0
0 votes
1 reply
1.1K views
Gam format specification
pangenome gam vg
updated by Jouni Sirén 85 • | written by guntul 4
0 votes
0 replies
390 views
read mapping coverage
homoeologous exchange
written by vinita14ramtekey 1
0 votes
1 reply
660 views
Intergenic annotation
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updated by lieven.sterck 1.6K • | written by Muhammad 0
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6 replies
1.8K views
Help with seqkit sort increasing file size in multifasta
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updated by GenoMax 16K • | written by FJCF 0
0 votes
2 replies
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TruSight Oncology 500 ctDNA v2 bed file
oncology trusight ctdna 500 v2
written by 1769mkc 127
0 votes
1 reply
864 views
Normalization and Comparison Methods across Gene Expression Data
expression statistics breast-cancer normalization
updated by Ram 4.5K • | written by Siqi 1
0 votes
5 replies
1.8K views
KEGG pathways
kegg pathways gene_products
written by mrashad 9
1 vote
1 reply
783 views
Pangenome alignment tools
pangenome alignment
updated by GenoMax 16K • | written by Uveyik 8
0 votes
1 reply
719 views
Pfam database score filtering
pfam enrichment
updated by biofalconch 132 • | written by ijarne 3
0 votes
2 replies
956 views
Handling of genes with multiple entries in ENSEMBL
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written by marionette.kent 0
0 votes
4 replies
1.2K views
Gene locus and gene ID
lncrna
updated by GenoMax 16K • | written by zizigolu 438
0 votes
2 replies
1.6K views
News: Online Workshop - A Practical Introduction to NGS Data Analysis (December 9-11, 2024)
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written by ecSeq Bioinformatics 9
0 votes
4 replies
1.3K views
OTU reads in no template control (NTC)
illumina 16s
updated by GenoMax 16K • | written by 1769mkc 127
0 votes
2 replies
1.3K views
Question about seqkit sort function
fasta multifasta seqkit
updated by shenwei356 870 • | written by FJCF 0
0 votes
2 replies
1.3K views
how do you open a networks file which gets from the Cytoscape by using python package networkx?
python cytoscape networkx
updated by Ram 4.5K • | written by 雨 2
3 votes
4 replies
2.2K views
Job: Permanent Position as Bioinformatician at the National Genomics Infrastructure (Sweden)
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written by Matthias Zepper 524
0 votes
2 replies
1.6K views
Giraffe DeepVariant workflow
deepvariant vg giraffe
updated by Istvan Albert 10K • | written by DBScan 53
0 votes
1 reply
943 views
Protein abundance-Metagenomes
diamond abundance protein metagenomes
written by erinda 1
0 votes
8 replies
2.0K views
making estimated proteome from genome
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updated by Mensur Dlakic 3.0K • | written by dec986 38
3 votes
6 replies
1.8K views
Tool: Any Paper: Ultra-fast QA and literature search based on Pubmed papers.
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written by Alan Liu 3
0 votes
1 reply
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Plotting Gene Ontology analysis results and questions about Fold Enrichment and other parameters
ontology enrichment gene go
updated by Lachlan 0 • | written by Raito92 10
0 votes
2 replies
3.0K views
Can anyone help me with this script error?
gsva
written by nuorain 4
1 vote
3 replies
1.6K views
Combine GBS and WGS data for variant calling in GWAS analysis
gbs combined wgs
updated by Denis 32 • | written by behnam 1
1 vote
0 replies
830 views
Job: Job Opening - Post-Doctoral Research Fellow - Cancer Immunotherapy
systems-biology immunology protein-engineering research-fellow postdoc
updated by Ram 4.5K • | written by Fred Hutch (Recruiting) 3
0 votes
6 replies
1.9K views
How to include the lane index in STARsolo count matrix barcodes.tsv?
10x starsolo singlecell star alignment
updated by jared.andrews07 1.9K • | written by mk 31
0 votes
3 replies
1.6K views
miloR - object 'as.SimpleList' of mode 'function' was not found when running calcNhoodDistance
seurat scrna-seq milor
written by shuaizh117 1
0 votes
2 replies
1.0K views
How to Identify Strain-Specific HPV and EBV Integration Sites in Human Whole Genome Sequencing Data?
ebv hpv genomics
updated by GenoMax 16K • | written by adam 0
1 vote
3 replies
1.7K views
Can I combine variants called using T2T-CHM13 with GRCh38?
chm13 t2t-chm13
updated by Jeremy Leipzig 2.3K • | written by Rina 2
1 vote
2 replies
2.3K views
Getting gnomAD allele frequencies for checking against populations
gnomad ancestry allele-frequency
updated by Jeremy Leipzig 2.3K • | written by Peter 1
0 votes
1 reply
994 views
Using reference genome for GSEA for different strains of the same bacterial species
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updated by Istvan Albert 10K • | written by Texx 4
0 votes
3 replies
1.3K views
lncRNA and mRNA analysis on Total RNA Sequencing data
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updated by Istvan Albert 10K • | written by kanika.151 16
0 votes
0 replies
638 views
News: Course: Structural Variant Bioinformatics
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updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
2 replies
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BSQR in GATK without known variants
gatk
written by fuwamozu 0
0 votes
0 replies
661 views
How to Reconstruct and Visualize Mitochondrial Primary Transcripts Using RNA-Seq Data?
rna-seq mitochondria transcriptomics minimap2
updated by GenoMax 16K • | written by hashim.rana11 4
0 votes
9 replies
1.9K views
metaspades error
metaspades
written by pranjalarun10 0
0 votes
1 reply
733 views
Multiple entries in a some columns on FeatureCounts output
featurecounts
updated by biofalconch 132 • | written by myoui3122010 3
0 votes
9 replies
2.1K views
How do I integrate public annotated data onto my data set?
selectintegrationfeatures integratedata seurat tabula-muris
updated by Bastien Hervé 680 • | written by Assa Yeroslaviz 197
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