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1 vote
0 replies
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Blog: How to create Sunburst plot using echarts4r R package or sunburstR package for categorical data of Dengue
echarts4r sunburstr
written by rohitsatyam102 rohitsatyam102
1 vote
0 replies
545 views
How to create scoring file with LDpred2?
pgs scoring ldpred2 beta
written by d0gs_ • d0gs_
0 votes
7 replies
1.5K views
Changing label geom_text in ggplot
ggplot
written by Nona • Nona
0 votes
2 replies
1.1K views
gWidgets2RGtk2 problem for newer versions of R
data-science gwidgets2rgtk2 rstudio r
updated by tothepoint tothepoint • written by burak • burak
0 votes
2 replies
1.1K views
spatial transcriptomic and protemomic
spatial transcriptomic
written by Synat • Synat
0 votes
0 replies
1.1K views
Job: Bioinformatician at Max Planck Institute for plant breeding research (Cologne, Germany)
bioinformatician mpipz opening
written by microfuge microfuge
2 votes
2 replies
1.5K views
Job: Experienced Bioinformatician Seeking Opportunities in NGS Data Analysis and Pipeline Development
pipeline-development ngs genomics transcriptomics data-analysis
written by Bernard • Bernard
0 votes
1 reply
1.0K views
Best Differential Abundance Tool for Microbiome Studies and Ensuring Cross-Study Comparability
abundance differential
written by benkosta • benkosta
0 votes
2 replies
1.5K views
Job: finding jobs in bioinformatics
jobs searching
written by Sam • Sam
0 votes
1 reply
911 views
Visualize and annotate protein domains within a genomic context, given complement
complement protein genomics
updated by cmdcolin cmdcolin • written by Madde • Madde
0 votes
6 replies
2.3K views
[ChIPSeq] Multiple Peaks at Cross Correlation Analysis
phantompeakqualtools chipseq crosscorrelation encode
written by Diren • Diren
0 votes
4 replies
1.3K views
Batch correction
rna-seq
written by Sakura • Sakura
0 votes
3 replies
1.4K views
Pre-pseudoalignment preprocessing
salmon
updated by dsull dsull • written by Nicholas • Nicholas
0 votes
4 replies
1.2K views
PCA in two similar conditions
rna-seq pca
updated by jared.andrews07 jared.andrews07 • written by Meghan.T • Meghan.T
2 votes
1 reply
985 views
[RNASeq] Excluding samples that cluster differently in PCA plot
pca rnaseq
updated by LChart LChart • written by Texx • Texx
0 votes
2 replies
1.8K views
TCGA Methylation Beta and Gene Expression Help
ensembl expression hgnc gene-names methylation
updated by yura.grabovska • yura.grabovska • written by zhenjie.chin88 • zhenjie.chin88
0 votes
3 replies
836 views
Would this level of base pair mismatch suggest the data is inaccurate?
accuracy data base-pair mismatch alignment
updated by GenoMax GenoMax • written by Lou11 • Lou11
0 votes
7 replies
2.0K views
BCFTOOLS: command does not work correctly. Can you help me?
bcftools
written by jhonatan.henrique • jhonatan.henrique
0 votes
0 replies
1.1K views
Data sets for prostate/cervical cancer
cancer datasets databases
written by M__ • M__
0 votes
4 replies
1.3K views
Rapid BaseQ drop in adaptor regions with UMI
adapter fastqc umi adaptor
updated by i.sudbery i.sudbery • written by geneticatt • geneticatt
0 votes
0 replies
951 views
Requesting help with Edge Weighted Graph Creation (Cytoscape)
cytoscape wgcna
written by Guntaas • Guntaas
0 votes
2 replies
1.7K views
RANGER-DTL ERROR: missing ')' in input tree expression line x column xx
ranger ranger-dtl fasttree
updated by philipgdv • philipgdv • written by seok1213neo • seok1213neo
0 votes
0 replies
469 views
Amplifying more then 6 subpools in an oligopool
wet-lab
written by gernophil • gernophil
0 votes
5 replies
1.2K views
PCR Primer Design
pcr primer
updated by Ram Ram • written by ebaduareb001 • ebaduareb001
0 votes
2 replies
891 views
Remove reference sequence from multifasta file
fasta multifasta
updated by lieven.sterck lieven.sterck • written by FJCF • FJCF
0 votes
2 replies
1.5K views
Using Tumor Immune Dysfunction and Exclusion (TIDE)
tpm cancer r
written by AlexStar • AlexStar
0 votes
8 replies
4.4K views
Currently recommended Oxford Nanopore data basecalling and preprocessing pipeline for de novo assembly applications
ont assembly nanopore preprocessing basecalling
updated by Asan Emirsale • Asan Emirsale • written by Denis Denis
0 votes
2 replies
946 views
GPU facility for single cell multi omics data analysis
multiomics google-colab gpu single-cell
written by KABILAN • KABILAN
0 votes
0 replies
436 views
Somatic-Sniper calls very few variants
sniper somatic
written by runfreely2 • runfreely2
0 votes
2 replies
840 views
Overlap entries in annotation
bedtools
updated by Dunois • Dunois • written by Muhammad • Muhammad
0 votes
2 replies
1.1K views
Request for Bioinformatics Workstation Configuration for Bacterial Whole Genome Analysis?
bacterial workstation whole genome amr
updated by Dunois • Dunois • written by mathavanbioinfo mathavanbioinfo
0 votes
0 replies
471 views
Is there a database with the mode of inheritance for diseases?
diagnostics genotyping allelotyping
written by njornet • njornet
0 votes
0 replies
582 views
Datasets with RNA-seq and drug sensitivity data
drug datasets sra rna-seq sensitivity
written by octpus616 • octpus616
0 votes
0 replies
948 views
Is it possible to convert the Hazard ratio from cox proportional hazard model into a survival function to estimate survival probability?
machinelearning hazardratio cox survivalanalysis survivalfunction
written by Yugan Gogul Muthukumar • Yugan Gogul Muthukumar
2 votes
2 replies
1.2K views
Is there any information about the reads duplication rate and sequencing reads length?
cfdna sequencing readduplication
written by Zeng Jingyu • Zeng Jingyu
0 votes
1 reply
772 views
HOMER annotateInteractions.pl error
annotateinteractions.pl homer
updated by JJJelly • JJJelly • written by anushkachaturvedi099 • anushkachaturvedi099
0 votes
0 replies
537 views
Strelka2 germline variants very different when pairing with different tumors?
germline
written by Zhenyu Zhang Zhenyu Zhang
0 votes
3 replies
1.5K views
Converting ICGC ids to TCGA format
cancer tcga icgc
updated by Zhenyu Zhang Zhenyu Zhang • written by hadas.samuels • hadas.samuels
0 votes
7 replies
2.6K views
merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisation
xena tcga normalisation rna-seq
written by theodore theodore
0 votes
1 reply
980 views
How to get full list of TCGA patients with mutation data
r tcgabiolinks tcga
updated by Zhenyu Zhang Zhenyu Zhang • written by heochin59 • heochin59
0 votes
8 replies
2.0K views
Assigning taxonomic features in CAT: incorrect species annotation?
metagenomics taxonomy cat
updated by mks002 mks002 • written by DriesB DriesB
1 vote
0 replies
740 views
Error: No sites have activity greater than filter value.
diffbind
written by kim • kim
0 votes
2 replies
841 views
Merge braker.gtf and SQANT3.gff3 file
annotation
written by anna_shin • anna_shin
0 votes
0 replies
763 views
Manta crash during getDepthFromAlignments
manta sv
updated by GenoMax GenoMax • written by lucas.lochovsky • lucas.lochovsky
0 votes
4 replies
1.3K views
Cannot access Cibersort at Stanford site-- Is server down today?
cibersort
written by Mitchell.frederick • Mitchell.frederick
0 votes
5 replies
5.1K views
How to interpret ANCOM-BC results when diff is true but passed_ss is false?
differential-abundance
updated by andres.firrincieli andres.firrincieli • written by benkosta • benkosta
0 votes
2 replies
790 views
Generating SVG figure by pasting XML text directly
programming svg publication figure
written by Stephan • Stephan
0 votes
1 reply
797 views
R studio
rstudio
updated by GenoMax GenoMax • written by Mohammad • Mohammad
0 votes
6 replies
1.4K views
sample-specific celltype in integrated data . Biology or batch effect ?
single-cell seurat scrnaseq batch-effect
written by AB AB
2 votes
10 replies
2.2K views
Inconsistent Methylation Levels Between Pairs in WGBS Data After Moving to NovaSeq X
x wgbs novaseq
updated by GenoMax GenoMax • written by Michal • Michal
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