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0 votes
2 replies
1.3K views
Problem in count Matrix from Featurecount
countmatrix featurecount bam
updated by GenoMax 16K • | written by daffodil 1
0 votes
2 replies
1.8K views
Integrating TCGA tumor RNAseq data with normal tissue samples from other sources
rna-seq prps dge tcga ruv-iii
written by CielDV 0
0 votes
2 replies
945 views
how to get genomic location of transcript positions
genomic-location m6anet
updated by GenoMax 16K • | written by baibhu1234 6
0 votes
0 replies
602 views
News: Phylogenomics course - online Dec 2-6
bayesian-analyses phylogenomics genomics-data
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
6 replies
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WES and GBAP1
wes homology gba ngs
written by Joel Wallenius 22
0 votes
0 replies
1.0K views
Minimum number of replicates when doing scRNA-seq using cell-lines?
design 10x single-cell
written by txema.heredia 31
0 votes
4 replies
1.8K views
Workstation RAM speed vs capacity
ngs workstation ai
updated by LChart 518 • | written by r.d.jongh 2
1 vote
6 replies
2.1K views
Why there are 40 chromosomes of Gallus gallus in NCBI and in the in karyotype studies there is only evidence of 39 chromosome
genome-assembly
updated by Ram 4.5K • | written by BenAawf 1
0 votes
2 replies
1.6K views
somatic copy number calling with ONT long-reads
ont somatic cancer cnv nanopore
written by eebloom 11
0 votes
3 replies
1.3K views
Biostatistics
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updated by Gordon Smyth 916 • | written by RCMC 1
0 votes
0 replies
511 views
Input for Powermarker
powermarker snp
updated by GenoMax 16K • | written by Smilesky 0
0 votes
0 replies
802 views
TCRdist3
tcrdist3 tcr vdj
written by jl_oxforduni 0
0 votes
1 reply
642 views
No gene and PAV has overlap warning while constructing pangenome
pangenome
updated by Irissssss 2 • | written by Bushra Bibi 8
0 votes
1 reply
905 views
How to compare and complement the missing gene and feature in gff3 file base on available gff3 reference ?
gff3 irgsp1.0 maker
updated by lieven.sterck 1.6K • | written by Sony Nguyen 2
1 vote
5 replies
2.9K views
Can I combine the GBS data with Whole Genome Resequencing for GWAS analysis
sequencing snp
updated by behnam 1 • | written by gengyang12138 2
0 votes
4 replies
1.6K views
Need to remove duplicates from GBS data?
gbs samblaster duplicates
written by MMW 0
0 votes
1 reply
1.1K views
fragment size estimation during vg mpmap and rpvg
vg
updated by Jordan M Eizenga 78 • | written by Juhyun 0
0 votes
0 replies
511 views
Junction Saturation for AS analysis
ont splice-junctions
updated by Ram 4.5K • | written by coolmattmonkey 3
0 votes
5 replies
1.8K views
MISO Sorted BAM file header mismatch
bam miso sam minimap2
updated by Istvan Albert 10K • | written by bimeva5703 0
1 vote
1 reply
765 views
Aptamer design
aptamer
updated by Matthias Zepper 524 • | written by MUHAMMAD SHAFIQ 1
0 votes
1 reply
1.3K views
Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how to address this issue?
degseq deseq2 edger rnaseq
updated by GenoMax 16K • | written by Jonathan 0
1 vote
0 replies
452 views
I want to run fisher's exact test on my haplotype data for multiple genes.
haplotype
written by vinita14ramtekey 1
0 votes
1 reply
943 views
Merging multiple runs of the same samples
metaspades fastq megahit shotgun metagenomics sequencing
updated by GenoMax 16K • | written by bioinformaticssrm2011 9
3 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, November 18, 2024
herald
written by Biostar 380
0 votes
2 replies
908 views
wrapping htslib and parsing CRAM files
expansionhunterdenovo htslib cram
written by chrisclarkson100 16
0 votes
0 replies
415 views
How to name substructures of a molecule using SMARTS patterns?
substructures molecules rdkit smarts chemoinformatics
written by phoenix.sum13 9
0 votes
2 replies
848 views
Length Polymorphism using long read Nanopore
genotyping nanopore
written by pixie@bioinfo 150
1 vote
0 replies
491 views
CNV Analysis for single bulk RNA-Seq Sample
cnv rna-seq
updated by Ram 4.5K • | written by hkarakurt 21
0 votes
0 replies
393 views
eRNAs count
erna
updated by Ram 4.5K • | written by Irene 1
0 votes
2 replies
2.8K views
Tutorial: Create Oncoprint with ggplot2
oncoplot ggplot2 oncoprint maftools
written by Yun 9
5 votes
6 replies
4.6K views
Forum: Science Games For Citizen Science And Educational Purposes
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updated by Devil911 Gaming 0 • | written by Mary 1.1K
0 votes
2 replies
961 views
vcf files comparison to find unique variants
vcf
updated by GenoMax 16K • | written by Nesma 0
0 votes
4 replies
2.2K views
I'm confused: polishing Nanopore consensus sequences (amplicons) with the original reads
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written by rDNA 2
1 vote
3 replies
2.3K views
How to filter and keep longest isoform per gene in gff3 file ?
gff isoform maker annotation
written by Sony Nguyen 2
0 votes
2 replies
1.0K views
Global Alignment tool
python
updated by Joe 2.2K • | written by Khaled 0
0 votes
0 replies
692 views
WGCNA module preservation using only adjacency matrix
wgcna
written by yang1641 0
0 votes
1 reply
955 views
help with germline analysis using cnvkit
cnvkit
updated by Eric T. 285 • | written by ww22runner 6
0 votes
1 reply
1.5K views
CNVKit batch output
cnvkit deletion duplication
updated by Eric T. 285 • | written by aLex97 1
0 votes
0 replies
397 views
Interpreting Pathway 7049: Fatty Acid Salvage in PICRUSt2 Results from Nephele
picrust
written by benkosta 0
0 votes
3 replies
1.4K views
I encountered some problem while using bitr() for gene ID transversion.
biomart
written by Pallondyle 0
0 votes
0 replies
611 views
Include NCBI taxonomic ID (txid) in the header of downloaded sequences using Biopython
taxonomy sequences biopython ncbi
written by Martín Ezequiel 0
0 votes
1 reply
1.1K views
Best Transcriptome file for Salmon after STAR alignment
fasta salmon star rna-seq alignment
updated by biofalconch 132 • | written by rayanelkholdi 0
0 votes
0 replies
1.2K views
ClusterProfiler GO / KEGG enrichment analysis for non Model organism
kegg rna-seq enrichemnt
written by Pegasus 13
0 votes
2 replies
1.1K views
Do I need to regressout uninteresting sources of variation bebofe pseudobul DESeq2 differential expression analysis in single cell data
scrna-seq regression deseq2 pseudobulk
updated by Ram 4.5K • | written by alvaroperona1 0
0 votes
0 replies
480 views
Performing Differential Analysis with NarrowPeak Files in ATAC-seq: Tumour vs. Control
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updated by Ram 4.5K • | written by Thom 0
0 votes
10 replies
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Question about CIBERSORTx Docker to Singularity
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updated by Jose 0 • | written by jinghuang800 1
0 votes
0 replies
539 views
specificity of pathway enrichment
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updated by Ram 4.5K • | written by hubsnets 3
0 votes
0 replies
1.2K views
Changing Cellchat labels or group.by function
cellchat
written by odi 3
0 votes
3 replies
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Deseq2 output and robust PCA (PcaGrid and PcaHubert)
rpca deseq2 rna-seq cpca
updated by Guoyan 0 • | written by Emma 0
0 votes
0 replies
523 views
Building design matrix for scRNAseq experiment
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updated by Ram 4.5K • | written by merdanosman 0
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