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0 votes
1 reply
908 views
conorm warning in python
python rnaseq conorm
updated by Mensur Dlakic 3.0K • | written by Shaimaa Gamal 1
1 vote
5 replies
3.9K views
What is the difference between `possorted_genome_bam.bam` in the output of `cellranger count` and `sample_alignments.bam` in the output of `cellranger multi`?
velocity rna-seq single-cell
updated by Ram 4.5K • | written by Dan 18
0 votes
7 replies
2.2K views
How to handle duplicate genes in DoHeatmap() for top DEGs across clusters (seurat single cell)
seurat
updated by Bastien Hervé 680 • | written by Picasa 71
0 votes
3 replies
2.3K views
How to update ncbi-blast+?
blast
updated by GenoMax 16K • | written by ongchip 0
0 votes
4 replies
1.1K views
Wilcox or T-test with percentages in R
r
updated by michael.ante 408 • | written by Nona 9
0 votes
3 replies
1.5K views
how to run limma for large datasets
r hpc biostatistics statistics
updated by Gordon Smyth 916 • | written by Bioinfonext 48
1 vote
7 replies
1.9K views
[construct a model.matrix ]
regression lm methylation model_matrix
updated by Dunois 301 • | written by kyj222637 1
0 votes
2 replies
1.9K views
Error 137 in Epi2me TB-AMR Workflow
amr ont epi2me pipeline tb
updated by jared.andrews07 1.9K • | written by End 0
0 votes
4 replies
1.6K views
Best way of visualzing RNA-seq bam files
igv
written by ATRX 118
0 votes
3 replies
1.1K views
Help with finding scRNA-seq data
10x scanpy python single-cell anndata
updated by ehaag 10 • | written by AlexStar 22
0 votes
4 replies
1.8K views
Comparing two RNA-seq runs (each has enough replicates) in DESeq2
deseq2
updated by james.hawley 10 • | written by bibrgr 0
0 votes
9 replies
3.4K views
bcl2fastq
bcl2fastq bcl fastq lane
updated by GenoMax 16K • | written by kilcdincer 1
0 votes
2 replies
1.3K views
How to perform corrected Cell Barcode/UMI calling with an externally sorted BAM?
bam alignment starsolo star
updated by dsull 781 • | written by mk 31
0 votes
1 reply
1.2K views
Missing Transcripts in StringTie GTF Output Affecting Downstream Analysis with prepDE.py
prepde.py stringtie
updated by lieven.sterck 1.6K • | written by upretia 0
0 votes
2 replies
1.1K views
Bowtie2 not aligning read...but should?
bowtie2
updated by GenoMax 16K • | written by theclubstyle 4
0 votes
0 replies
609 views
AAI matrix with compareM
aai matrix
written by anna 0
0 votes
15 replies
8.9K views
ADMIXTURE Segmentatio fault
admixture plink vcf
updated by Mwangana 0 • | written by pmc.sa 4
0 votes
5 replies
2.8K views
Handling Negative Values in Log-Transformed a Dataset for Differential Expression Analysis with Limma
microarray
updated by Gordon Smyth 916 • | written by Maryam 0
0 votes
3 replies
1.5K views
Full length 18S rRNA data from Nanopre
linux
updated by 1769mkc 127 • | written by Adyasha 0
1 vote
3 replies
1.8K views
What's going on with Ensembl?
biomart ensembl
updated by Louisse_Ensembl 21 • | written by yura.grabovska 94
0 votes
4 replies
2.3K views
Error in biomaRt useMart and useDataset accessing ovis aries genome
biomart
updated by Louisse_Ensembl 21 • | written by Michael 0
0 votes
3 replies
2.0K views
PCA Plotting Differences Before and After Batch Correction in RNA-seq for Meta-Analysis
batch rna-seq correction pca
updated by Basti 210 • | written by Nelo 2
0 votes
2 replies
2.0K views
How to install deconstructSigs in R
r
updated by ATpoint 9.1K • | written by Zhenyu Zhang 130
0 votes
1 reply
1.1K views
Is there a function in cytoscape for calculating node strength ?
network cytoscape igraph
updated by Scooter 31 • | written by SplitInf 2
0 votes
1 reply
738 views
CRISpick github/downloadable local copy
crispr crisprai crispicj
updated by GenoMax 16K • | written by noodle 65
1 vote
0 replies
1.4K views
How to create a signature matrix, using scRNA-seq data, for downstream CIBERSORTx deconvolution of bulk data when the data is too heavy?
cibersortx deconvolution seurat scrna-seq bulkrna-seq
written by Fossil 3
0 votes
0 replies
486 views
Single-Cell RNA Sequencing: Find Tissue with Highest Sox1 Expression
rna-seq
written by Koki 1
0 votes
2 replies
1.3K views
Method to detect CNV in a large set of coverage profile ?
bam cnv coverage machine-learning
updated by jared.andrews07 1.9K • | written by Pierre Lindenbaum 17K
1 vote
0 replies
744 views
Blog: How to create Sunburst plot using echarts4r R package or sunburstR package for categorical data of Dengue
echarts4r sunburstr
written by rohitsatyam102 95
1 vote
0 replies
550 views
How to create scoring file with LDpred2?
pgs scoring ldpred2 beta
written by d0gs_ 1
0 votes
7 replies
1.5K views
Changing label geom_text in ggplot
ggplot
written by Nona 9
0 votes
2 replies
1.1K views
gWidgets2RGtk2 problem for newer versions of R
data-science gwidgets2rgtk2 rstudio r
updated by tothepoint 94 • | written by burak 0
0 votes
2 replies
1.1K views
spatial transcriptomic and protemomic
spatial transcriptomic
written by Synat 0
0 votes
0 replies
1.1K views
Job: Bioinformatician at Max Planck Institute for plant breeding research (Cologne, Germany)
bioinformatician mpipz opening
written by microfuge 197
2 votes
2 replies
1.5K views
Job: Experienced Bioinformatician Seeking Opportunities in NGS Data Analysis and Pipeline Development
pipeline-development ngs genomics transcriptomics data-analysis
written by Bernard 3
0 votes
1 reply
1.0K views
Best Differential Abundance Tool for Microbiome Studies and Ensuring Cross-Study Comparability
abundance differential
written by benkosta 0
0 votes
2 replies
1.5K views
Job: finding jobs in bioinformatics
jobs searching
written by Sam 0
0 votes
1 reply
932 views
Visualize and annotate protein domains within a genomic context, given complement
complement protein genomics
updated by cmdcolin 448 • | written by Madde 2
0 votes
6 replies
2.3K views
[ChIPSeq] Multiple Peaks at Cross Correlation Analysis
phantompeakqualtools chipseq crosscorrelation encode
written by Diren 0
0 votes
4 replies
1.3K views
Batch correction
rna-seq
written by Sakura 0
0 votes
3 replies
1.4K views
Pre-pseudoalignment preprocessing
salmon
updated by dsull 781 • | written by Nicholas 0
0 votes
4 replies
1.2K views
PCA in two similar conditions
rna-seq pca
updated by jared.andrews07 1.9K • | written by Meghan.T 1
2 votes
1 reply
988 views
[RNASeq] Excluding samples that cluster differently in PCA plot
pca rnaseq
updated by LChart 518 • | written by Texx 4
0 votes
2 replies
1.9K views
TCGA Methylation Beta and Gene Expression Help
ensembl expression hgnc gene-names methylation
updated by yura.grabovska 94 • | written by zhenjie.chin88 0
0 votes
3 replies
850 views
Would this level of base pair mismatch suggest the data is inaccurate?
accuracy data base-pair mismatch alignment
updated by GenoMax 16K • | written by Lou11 0
0 votes
7 replies
2.1K views
BCFTOOLS: command does not work correctly. Can you help me?
bcftools
written by jhonatan.henrique 4
0 votes
0 replies
1.1K views
Data sets for prostate/cervical cancer
cancer datasets databases
written by M__ 20
0 votes
4 replies
1.4K views
Rapid BaseQ drop in adaptor regions with UMI
adapter fastqc umi adaptor
updated by i.sudbery 2.3K • | written by geneticatt 14
0 votes
0 replies
980 views
Requesting help with Edge Weighted Graph Creation (Cytoscape)
cytoscape wgcna
written by Guntaas 0
0 votes
2 replies
1.7K views
RANGER-DTL ERROR: missing ')' in input tree expression line x column xx
ranger ranger-dtl fasttree
updated by philipgdv 0 • | written by seok1213neo 4
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