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0 votes
1 reply
970 views
Differential Expression Analysis with only one replicate
differential-expression-analysis
updated by Ram Ram • written by ZuelTech • ZuelTech
1 vote
7 replies
2.1K views
Basic de novo assembly of plant genome
assembly
updated by lieven.sterck lieven.sterck • written by Lemonhope • Lemonhope
0 votes
4 replies
1.5K views
TCGAbiolinks - fewer samples than expected
tcgabiolinks tcga
updated by Zhenyu Zhang Zhenyu Zhang • written by elmira.yazdii • elmira.yazdii
0 votes
4 replies
1.3K views
NCI Genomic Data Commons gdc-rnaseq-tool
rna-seq genomic-data-commons
written by cthangav • cthangav
0 votes
6 replies
2.5K views
count number of polymorphic sites among samples in vcf
bcftools vcf
written by vaellis • vaellis
0 votes
2 replies
1.2K views
Using Lordec to correct Nanopore DRS reads
lordec nanopore read-correction
written by baibhu1234 • baibhu1234
0 votes
1 reply
829 views
Genetic modification in mosquito sequence
gene-modification crispr ncbi
updated by Ram Ram • written by sugamohanasundaram • sugamohanasundaram
0 votes
0 replies
807 views
EU-Seq Differentially expressed transcripts
eu-seq seq nascent rna
written by Bruno • Bruno
0 votes
0 replies
1.1K views
Job: Seeking remote internship/job
spain remote europe portugal
written by Guilherme • Guilherme
0 votes
4 replies
1.5K views
How to interpret WebGestalt plots for GSEA and ORA?
webgestalt gsea ora
written by Haad • Haad
0 votes
1 reply
922 views
PacBio RNAseq Isoseq Pipeline question
isoseq pipeline pacbio rnaseq
updated by GenoMax GenoMax • written by evan.kransdorf • evan.kransdorf
0 votes
4 replies
8.7K views
Cellcyclescoring did not work in Seurat V5
seurat single-cell
updated by Bastien Hervé Bastien Hervé • written by synat.keam • synat.keam
0 votes
2 replies
1.4K views
Getting cds files from ncbi using accession numbers
fasta cds ncbi
updated by Ram Ram • written by lily • lily
0 votes
1 reply
781 views
split gamp by chromosome or extract specific regions.
vg
updated by Jordan M Eizenga • Jordan M Eizenga • written by Juhyun • Juhyun
0 votes
6 replies
1.5K views
ggplot with ORR in y axis
ggplot
written by Nona • Nona
0 votes
0 replies
580 views
Phasing haplotypes from the crosses
gatk snps phasing haplotypes
written by ayeraselvan • ayeraselvan
0 votes
1 reply
800 views
Extract bacterial SNP from PATRC
snps genomes patric bacterial
updated by GenoMax GenoMax • written by Jennifer • Jennifer
0 votes
7 replies
1.8K views
Gene expression at 0 in single cell experiments
seurat single-cell
updated by Ram Ram • written by Gerard • Gerard
1 vote
0 replies
651 views
Extract all protein-coding genes from TxDb.
r granges iranges txdb
written by octpus616 • octpus616
0 votes
0 replies
780 views
Job: Postdoc in reproductive genetics, University of Gothenburg, Sweden
bioinformatics computational-biology genetics postdoc
updated by Ram Ram • written by pol.sole.navais • pol.sole.navais
1 vote
19 replies
4.7K views
Snakemake error
snakemake
written by aUser • aUser
0 votes
0 replies
743 views
Job: Assistant Professor of Computational Molecular Biology
molecular biology
written by UCSDBioSci • UCSDBioSci
0 votes
0 replies
586 views
Skilled occupation list austrlia
australia
written by anasjamshed anasjamshed
0 votes
1 reply
702 views
T2T assembly supporting tools
telomere t2t assembly genome
written by eva_u • eva_u
0 votes
12 replies
3.8K views
Is a SLURM job array submission suitable for parallelizing multiple FASTQ file downloads?
parallel-computing hpc slurm fastq
updated by Dave Carlson Dave Carlson • written by kalavattam • kalavattam
0 votes
1 reply
1.2K views
Cut&Run: E-coli spike-in
normalization cut-and-run
updated by Ram Ram • written by kim • kim
0 votes
0 replies
833 views
Issues using reduceSimMatrix with a custom annotation
enrichment go gosemsim rrvgo annotationforge
written by daccar98 • daccar98
0 votes
2 replies
1.5K views
Perform DESeq2 with One factor with three levels vs Two factor with two levels
deseq2
updated by swbarnes2 swbarnes2 • written by وفاء • وفاء
0 votes
7 replies
1.6K views
Combining two closely related bacterial annotated genomes to analyze as one pooled group
genomes rnaseq
updated by i.sudbery i.sudbery • written by brayas13 • brayas13
1 vote
4 replies
3.8K views
nf-core/rnaseq, problem with ensembl reference
nfcore nextflow ensembl rnaseq
updated by Kai • Kai • written by Filip • Filip
0 votes
0 replies
747 views
VG STATS: 2000 Properly Paired Inquiry
samtools variation-graph sequencing vg
updated by Ram Ram • written by abdelf6 • abdelf6
0 votes
0 replies
531 views
Database for peptide drugs
database
written by Jiayi Yang • Jiayi Yang
0 votes
3 replies
2.1K views
identify transposable elements in iso-seq data
te iso-seq repeatmasker
updated by lieven.sterck lieven.sterck • written by triplee0305 • triplee0305
5 votes
5 replies
27K views
Herald: The Biostar Herald for Monday, November 04, 2024
herald
updated by Dunois • Dunois • written by Biostar Biostar
2 votes
1 reply
814 views
Creating pathogen test database from nt NCBI
blast ncbi metagenomics
updated by GenoMax GenoMax • written by r.d.jongh • r.d.jongh
0 votes
1 reply
813 views
Need coding help for GO enrichment analysis for non model alga with topGO
r enrichment topgo go
updated by Dunois • Dunois • written by rhossen • rhossen
1 vote
1 reply
2.7K views
Which Tool is Better for Genome Polishing Using Illumina and Nanopore Reads: Polypolish vs. Pilon and Racon vs. Medaka?
medaka assembly racon polypolish pilon
updated by Dunois • Dunois • written by SomeOne • SomeOne
0 votes
0 replies
648 views
Calculate the Distribution of Peaks in 5'UTR, 3'UTR, and CDS of Transcripts Using R
r rna-seq granges
written by octpus616 • octpus616
0 votes
2 replies
930 views
Duplication removal of RNA-seq fastq files during the process of annotation
duplication rna-seq annotation
written by Abieskawa • Abieskawa
0 votes
2 replies
1.6K views
PolyA tail trimming in Nanopore Direct RNA Sequencing reads
nanopore apa
written by baibhu1234 • baibhu1234
0 votes
1 reply
666 views
fail to download data from seurat
r seurat
updated by yura.grabovska • yura.grabovska • written by 宇 • 宇
0 votes
0 replies
630 views
DiffBind ATAC-Seq Profile Plot Question About Identifying Sites
diffbind profileplot atac-seq
written by B.N. • B.N.
1 vote
1 reply
1.4K views
GWAS from direct samples... is imputation necessary?
imputation plink gwas
updated by LChart LChart • written by sabrilo171 • sabrilo171
0 votes
1 reply
915 views
WGCNA unpaired trait/expression data
wgcna
updated by LChart LChart • written by nika13 • nika13
0 votes
3 replies
1.4K views
ChIP-seq reads trimming
trimming chipseq fastp alignment bowtie2
updated by GenoMax GenoMax • written by sk_24 • sk_24
1 vote
6 replies
2.5K views
What is the best backgrowun gene list to choose for GSEA, ORA, and for KOBAS
rna-seq
written by Pegasus • Pegasus
0 votes
1 reply
1.1K views
How to normalise the RNAseq data without spike in?
nanopore spike-in rnaseq
written by Mo • Mo
0 votes
4 replies
1.8K views
Emphasizing biological effect of candidate variants used in polygenic risk score
prs gwas polygenicriskscore
written by K Lee • K Lee
0 votes
0 replies
713 views
News: Genomic Data Visualisation with R (online course)
r ggplot2 datavisualization
written by Physalia-courses Physalia-courses
0 votes
0 replies
565 views
Easy way to annotate CDSs in GFF3 with HGNC gene symbol (and transcript name?)
gff3 gtf
written by gernophil • gernophil
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