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0 votes
0 replies
483 views
Amplifying more then 6 subpools in an oligopool
wet-lab
written by gernophil 15
0 votes
5 replies
1.2K views
PCR Primer Design
pcr primer
updated by Ram 4.5K • | written by ebaduareb001 0
0 votes
2 replies
909 views
Remove reference sequence from multifasta file
fasta multifasta
updated by lieven.sterck 1.6K • | written by FJCF 0
0 votes
2 replies
1.5K views
Using Tumor Immune Dysfunction and Exclusion (TIDE)
tpm cancer r
written by AlexStar 22
0 votes
8 replies
4.5K views
Currently recommended Oxford Nanopore data basecalling and preprocessing pipeline for de novo assembly applications
ont assembly nanopore preprocessing basecalling
updated by Asan Emirsale 1 • | written by Denis 32
0 votes
2 replies
962 views
GPU facility for single cell multi omics data analysis
multiomics google-colab gpu single-cell
written by KABILAN 13
0 votes
0 replies
447 views
Somatic-Sniper calls very few variants
sniper somatic
written by runfreely2 0
0 votes
2 replies
848 views
Overlap entries in annotation
bedtools
updated by Dunois 301 • | written by Muhammad 0
0 votes
2 replies
1.1K views
Request for Bioinformatics Workstation Configuration for Bacterial Whole Genome Analysis?
bacterial workstation whole genome amr
updated by Dunois 301 • | written by mathavanbioinfo 8
0 votes
0 replies
485 views
Is there a database with the mode of inheritance for diseases?
diagnostics genotyping allelotyping
written by njornet 2
0 votes
0 replies
612 views
Datasets with RNA-seq and drug sensitivity data
drug datasets sra rna-seq sensitivity
written by octpus616 14
0 votes
0 replies
962 views
Is it possible to convert the Hazard ratio from cox proportional hazard model into a survival function to estimate survival probability?
machinelearning hazardratio cox survivalanalysis survivalfunction
written by Yugan Gogul Muthukumar 3
2 votes
2 replies
1.2K views
Is there any information about the reads duplication rate and sequencing reads length?
cfdna sequencing readduplication
written by Zeng Jingyu 10
0 votes
1 reply
780 views
HOMER annotateInteractions.pl error
annotateinteractions.pl homer
updated by JJJelly 0 • | written by anushkachaturvedi099 0
0 votes
0 replies
555 views
Strelka2 germline variants very different when pairing with different tumors?
germline
written by Zhenyu Zhang 130
0 votes
3 replies
1.5K views
Converting ICGC ids to TCGA format
cancer tcga icgc
updated by Zhenyu Zhang 130 • | written by hadas.samuels 0
0 votes
7 replies
2.6K views
merge my own RNA-seq data with TCGA UCSCXena data sets. and proper normalisation
xena tcga normalisation rna-seq
written by theodore 14
0 votes
1 reply
996 views
How to get full list of TCGA patients with mutation data
r tcgabiolinks tcga
updated by Zhenyu Zhang 130 • | written by heochin59 0
0 votes
8 replies
2.1K views
Assigning taxonomic features in CAT: incorrect species annotation?
metagenomics taxonomy cat
updated by mks002 22 • | written by DriesB 12
1 vote
0 replies
749 views
Error: No sites have activity greater than filter value.
diffbind
written by kim 1
0 votes
2 replies
848 views
Merge braker.gtf and SQANT3.gff3 file
annotation
written by anna_shin 0
0 votes
0 replies
783 views
Manta crash during getDepthFromAlignments
manta sv
updated by GenoMax 16K • | written by lucas.lochovsky 0
0 votes
4 replies
1.3K views
Cannot access Cibersort at Stanford site-- Is server down today?
cibersort
written by Mitchell.frederick 1
0 votes
5 replies
5.3K views
How to interpret ANCOM-BC results when diff is true but passed_ss is false?
differential-abundance
updated by andres.firrincieli 412 • | written by benkosta 0
0 votes
2 replies
799 views
Generating SVG figure by pasting XML text directly
programming svg publication figure
written by Stephan 0
0 votes
1 reply
805 views
R studio
rstudio
updated by GenoMax 16K • | written by Mohammad 0
0 votes
6 replies
1.4K views
sample-specific celltype in integrated data . Biology or batch effect ?
single-cell seurat scrnaseq batch-effect
written by AB 39
2 votes
10 replies
2.2K views
Inconsistent Methylation Levels Between Pairs in WGBS Data After Moving to NovaSeq X
x wgbs novaseq
updated by GenoMax 16K • | written by Michal 2
2 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, November 11, 2024
herald
written by Biostar 380
0 votes
1 reply
855 views
color specific genes in VariableFeaturePlot
ggplot2 variablefeatureplot seurat
updated by Bastien Hervé 680 • | written by Assa Yeroslaviz 197
0 votes
0 replies
520 views
Mapping gene symbols to MONDO codes
mondo genes mapping
written by CRivi 0
0 votes
0 replies
1.4K views
Blog: Tools and Future of eQTL: Data Gathering and Application in Genetic Medicine
eqtl snps gwas
written by Novogene 54
1 vote
1 reply
1.1K views
Strategy to find transgene copy number and integration sites using only Nanopore simplex reads?
sequencing transgenes ngs
updated by colindaven 844 • | written by Mark 6
0 votes
4 replies
1.5K views
Where can I download a BED file with exonic regions?
exome bed
updated by Pierre Lindenbaum 17K • | written by njornet 2
0 votes
2 replies
1.1K views
cellranger error - insufficient disc space allocated to cellranger
cellranger
updated by yura.grabovska 94 • | written by tony_88888 1
0 votes
1 reply
986 views
Pigeon make-seurat produces empty output
isoseq pigeon pacbio
updated by yura.grabovska 94 • | written by TheCatalyst 0
0 votes
0 replies
502 views
Germline CNV CALLING
germline cnv
updated by GenoMax 16K • | written by Smilesky 0
0 votes
0 replies
569 views
Packages for constructing Phylogenetic tree from HapMap file
hapmap tree phylogenetic snp
written by sujee119 0
0 votes
5 replies
3.8K views
How Do I create a BED file from an hard masked fasta?
genome sequencing
updated by hewm2008 5 • | written by marcofraca 2
0 votes
1 reply
1.2K views
What is the reason that all high throughput sequencing data for the human brain is snRNA-seq instead of scRNA-seq ?
10x scanpy python single-cell anndata
updated by jared.andrews07 1.9K • | written by AlexStar 22
0 votes
2 replies
862 views
Picard LiftoverVCF Maps Variants to Incorrect Chromosomes When Processing Individual Chromosomes
liftovervcf
written by jonas.andersson 5
0 votes
0 replies
728 views
News: Master Evidence Synthesis with Meta-analysis in R (Online Course - Feb 10-14, 2025)
meta-analysis review evidence-synthesis
written by Physalia-courses 281
0 votes
3 replies
1.0K views
PCA plot
fviz_pca factoextra
updated by Bastien Hervé 680 • | written by 4732b159 0
0 votes
8 replies
2.3K views
NGS data analysis
ngs eukaryotic
written by Acervo 0
0 votes
0 replies
659 views
Intersect between bedGraph and bed file
count bedtools bedgraph matrix
written by daffodil 1
1 vote
0 replies
681 views
is there any data base or reference to provide a comprehensive list of CD marker expression in different white blood cell types?
deg myeloid cdmarker leukocyte
written by qasemi.m.q 1
0 votes
2 replies
1.6K views
How to interpret that overrepresented and duplicate sequences influence %GC content?
duplicates fastqc multiqc fastq gc
written by tvibhaps 1
0 votes
0 replies
614 views
Should we normalize/transform WGBS beta values?
normalization wgbs methylation transfromation
written by Lalaland 4
0 votes
4 replies
1.5K views
What is the best way to confirm if a mutated gene is more frequent in recurrence group than in baseline?
statistics compare_groups gene_count
written by Lila M 130
0 votes
0 replies
576 views
How to combine replicates in profile plot in profileplyr package?
atac-seq profileplot profileplyr
updated by GenoMax 16K • | written by B.N. 1
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