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0 votes
2 replies
1.8K views
No Cluster ID's present when making UMAP for Joint RNA and ATAC analysis: Signac 10x multiomic tutorial
multiomics snatacseq snrnaseq
written by bgbs 0
0 votes
0 replies
537 views
Phasing alleles with SHAPEIT4: cases and controls together or separately?
cases-controls separately together case-control phasing
written by igor.alcaras 0
2 votes
1 reply
2.3K views
Is it better to phase two populations together or separately?
phasing beagle populations
updated by igor.alcaras 0 • | written by eyb 27
0 votes
8 replies
2.4K views
SRAtoolkit --split-files output
sratoolkit sra fastq
written by tony_88888 1
0 votes
0 replies
754 views
database of gmap file for GLIMPSE2 imputation
gmap glimpse2
written by cautree 0
0 votes
6 replies
2.6K views
Create a fasta and gtf file
gtf human genome fasta
updated by Juke34 949 • | written by ATRX 118
0 votes
2 replies
1.1K views
Regarding to Two-color microarray data analysis (DGE)
differential-expression-analysis
updated by Ram 4.5K • | written by SHIRUI 1
0 votes
12 replies
3.7K views
dedup STAR transcriptome file using umi_tools
rna-seq umi transcriptome umi_tools
written by ATRX 118
0 votes
1 reply
852 views
ChIP-seq signal values
values chipseq signal
updated by 1769mkc 127 • | written by sk_24 2
0 votes
0 replies
568 views
Speclib of Rattus novergicus (taxid 10116) to use in DIA-NN
proteomics
written by thalisommoreiraskt 0
0 votes
1 reply
895 views
News: [Survey] Help Shape the Future of Genomic Data Storage Solutions!
genomics bioinformatics survey solutions storage
updated by Michael Dondrup 5.6K • | written by spacecow 0
1 vote
1 reply
625 views
QQ plot with small bump in the middle
qq-plot.gwas
updated by Ram 4.5K • | written by zhuzhu 1
0 votes
3 replies
2.4K views
Confused by reference files
reference alignment
updated by GenoMax 16K • | written by Nesma 0
0 votes
4 replies
1.4K views
Contrasts for comparing condition within tissue
limma deseq2 edger contrasts
updated by SamGG 15 • | written by Ben 3
0 votes
2 replies
1.1K views
How to Map NCBI taxid to Open Tree of Life ott_id Without Using Scientific Names?
taxonomy ott
written by Martín Ezequiel 0
0 votes
2 replies
1.3K views
Cellranger: Demux pooled (hashing antibodies) GEX and VDJ 10x sequence fastq data
hashing cellranger demux
written by Flipstone 0
0 votes
0 replies
695 views
Fixed peak width in ENCODE TFs ChIP-seq
macs2 chip-seq encode
written by DavideBrex 2
0 votes
3 replies
1.2K views
Questions about finding similar genes and dissimilar genes in BLAST
e-value similarity blast
updated by biofalconch 132 • | written by William 0
1 vote
3 replies
2.9K views
Question about variant calling method using pangenome-graph
vg
updated by Jouni Sirén 85 • | written by Marion 1
0 votes
1 reply
891 views
Are there specific pipelines for identifying solo-TIRs?
solo-tir elements transposable
updated by biofalconch 132 • | written by Marcos 1
0 votes
5 replies
2.3K views
Optical Duplicates
gatk markduplicates optical-duplicates
updated by Ram 4.5K • | written by ebogen 1
2 votes
2 replies
1.2K views
Tool: A notebook for checking relatedness and X heterozygosity from sequencing data
heterozygosity relatedness sequencing sex estimation
written by barslmn 245
0 votes
0 replies
759 views
Signac for mgatk scRNA-seq data
mgatk signac scrna-seq
written by marco.barr 22
0 votes
0 replies
626 views
Homer annotatePeaks.pl output
start annotatepeaks.pl chr homer position
updated by GenoMax 16K • | written by Rakesh 0
0 votes
2 replies
1.0K views
Extract gene_id and protein_id from .gtf file to create a list with them
gtf bash protein_id
written by Eduardo Oñate 0
0 votes
0 replies
586 views
GEOquery getGEO is normalized data or not?
getgeo geoquery microarray
written by tyasird 1
0 votes
35 replies
7.7K views
Indexing a 2.6GB Plant Genome Using STAR (genomeGenerate Mode) Terminated Due to RAM Limit — Can the Genome Be Split for Indexing, or Are There Other Solutions?
star ran-seq bam genome indexing
updated by Dunois 301 • | written by Vijith 10
0 votes
3 replies
1.2K views
Tool: I Built a Simple Website to Help Researchers find Research Grants
web-application grants research funding
updated by GenoMax 16K • | written by bitsofadventures 4
0 votes
1 reply
1.0K views
Differential Expression Analysis with only one replicate
differential-expression-analysis
updated by Ram 4.5K • | written by ZuelTech 0
1 vote
7 replies
2.2K views
Basic de novo assembly of plant genome
assembly
updated by lieven.sterck 1.6K • | written by Lemonhope 1
0 votes
4 replies
1.5K views
TCGAbiolinks - fewer samples than expected
tcgabiolinks tcga
updated by Zhenyu Zhang 130 • | written by elmira.yazdii 0
0 votes
4 replies
1.3K views
NCI Genomic Data Commons gdc-rnaseq-tool
rna-seq genomic-data-commons
written by cthangav 11
0 votes
6 replies
2.5K views
count number of polymorphic sites among samples in vcf
bcftools vcf
written by vaellis 0
0 votes
2 replies
1.2K views
Using Lordec to correct Nanopore DRS reads
lordec nanopore read-correction
written by baibhu1234 6
0 votes
1 reply
837 views
Genetic modification in mosquito sequence
gene-modification crispr ncbi
updated by Ram 4.5K • | written by sugamohanasundaram 0
0 votes
0 replies
820 views
EU-Seq Differentially expressed transcripts
eu-seq seq nascent rna
written by Bruno 0
0 votes
0 replies
1.1K views
Job: Seeking remote internship/job
spain remote europe portugal
written by Guilherme 0
0 votes
4 replies
1.6K views
How to interpret WebGestalt plots for GSEA and ORA?
webgestalt gsea ora
written by Haad 0
0 votes
1 reply
948 views
PacBio RNAseq Isoseq Pipeline question
isoseq pipeline pacbio rnaseq
updated by GenoMax 16K • | written by evan.kransdorf 1
0 votes
4 replies
8.8K views
Cellcyclescoring did not work in Seurat V5
seurat single-cell
updated by Bastien Hervé 680 • | written by synat.keam 12
0 votes
2 replies
1.4K views
Getting cds files from ncbi using accession numbers
fasta cds ncbi
updated by Ram 4.5K • | written by lily 0
0 votes
1 reply
799 views
split gamp by chromosome or extract specific regions.
vg
updated by Jordan M Eizenga 78 • | written by Juhyun 0
0 votes
6 replies
1.5K views
ggplot with ORR in y axis
ggplot
written by Nona 9
0 votes
0 replies
599 views
Phasing haplotypes from the crosses
gatk snps phasing haplotypes
written by ayeraselvan 1
0 votes
1 reply
810 views
Extract bacterial SNP from PATRC
snps genomes patric bacterial
updated by GenoMax 16K • | written by Jennifer 0
0 votes
7 replies
1.8K views
Gene expression at 0 in single cell experiments
seurat single-cell
updated by Ram 4.5K • | written by Gerard 2
1 vote
0 replies
675 views
Extract all protein-coding genes from TxDb.
r granges iranges txdb
written by octpus616 14
0 votes
0 replies
789 views
Job: Postdoc in reproductive genetics, University of Gothenburg, Sweden
bioinformatics computational-biology genetics postdoc
updated by Ram 4.5K • | written by pol.sole.navais 1
1 vote
19 replies
4.8K views
Snakemake error
snakemake
written by aUser 8
0 votes
0 replies
764 views
Job: Assistant Professor of Computational Molecular Biology
molecular biology
written by UCSDBioSci 3
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