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0 votes
2 replies
883 views
Trinity analysis error
trinity
written by ongchip • ongchip
0 votes
0 replies
771 views
CIBERSORTx error (error in rep(2, size * length(cells) -1)) : invalid 'times' argument
cibersortx cibersort scrna-seq rna-seq deconvolution
written by Amairani • Amairani
0 votes
2 replies
1.1K views
Reconciling old crystallography papers with modern sequencing data
pdb proteomics
updated by Wayne Wayne • written by John Ma John Ma
0 votes
0 replies
448 views
Evaluate homopolymeric tracts in a set of microbial genomes
genomes genomics
updated by Ram Ram • written by Madde • Madde
0 votes
5 replies
1.2K views
Coverage/depth of merged bam files
samtools
updated by GenoMax GenoMax • written by slzr_ • slzr_
0 votes
1 reply
954 views
Multiple Synteny Plot using MCScanX.
synteny mcscanx
updated by alex.zaccaron alex.zaccaron • written by a.bibek52 • a.bibek52
0 votes
0 replies
793 views
News: Join our Eukaryotic Genome Assembly Using PacBio and Hi-C course, taking place online from 4-8 November 2024!
pacbio genome-assembly hic long-reads
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
5 replies
1.6K views
Distinguishing gfa and rgfa files
gfa rgfa
updated by GenoMax GenoMax • written by guntul • guntul
0 votes
4 replies
1.2K views
Help with Generating Clustered Heatmap from Large Datasets
heatmap
updated by Mensur Dlakic Mensur Dlakic • written by ArtiCore • ArtiCore
0 votes
2 replies
1.8K views
Pangenome analysis
roary pangenome bakta prokka
written by erinda • erinda
0 votes
1 reply
776 views
Alternative to BLAST with N and mismatches as input
blast
updated by lieven.sterck lieven.sterck • written by gernophil • gernophil
0 votes
0 replies
1.1K views
Best Practices for Handling Negative Values in MFI Data after log base 2 transformation with median normalization
normalization statistics log-transformation
updated by Ram Ram • written by Alaa Elsaghir • Alaa Elsaghir
0 votes
3 replies
1.3K views
DeNovo Assembly - Assigning gene description
braker2 denovo-assembly masurca wgs
updated by Ram Ram • written by Sowmya Pulapet • Sowmya Pulapet
0 votes
16 replies
4.1K views
Question about edgeR p-values/FDR values
edger
written by Ronin • Ronin
0 votes
1 reply
904 views
Plot query cells on top of reference cells in UMAP
r integration seurat
updated by Bastien Hervé Bastien Hervé • written by saicchan • saicchan
0 votes
2 replies
935 views
Is it necessary to adjust genome to the same strand direction?
strand-direction vg
written by Yao • Yao
0 votes
2 replies
852 views
xCell output and immune cell ratio
statistics immunedeconv xcell
written by a.stef.44 • a.stef.44
0 votes
1 reply
902 views
Spades Genome Assembly
genome spades assembly
updated by dthorbur dthorbur • written by SomeOne • SomeOne
0 votes
2 replies
865 views
Error in Trinity installation
trinity
updated by Ram Ram • written by ongchip • ongchip
0 votes
9 replies
5.7K views
Bam files not accepted in dba.count
samtools diffbind dba.count bam
updated by katie_kat • katie_kat • written by corinne_hutfilz • corinne_hutfilz
0 votes
0 replies
582 views
How to normalize gene abundance from long read metagenomic data?
normalization metagenomics long-read gene-abundance
written by Adrián • Adrián
0 votes
0 replies
770 views
SILVA vs PR2 vs both for 18S metabarcoding?
taxonomy 18s metabarcoding
written by hjarnek • hjarnek
0 votes
0 replies
676 views
Your suggestion how to annotate cell type from visium data
spatial-transcriptomics
written by Chris • Chris
0 votes
0 replies
357 views
HAPMIX : interpretation of the 16 probabilities generated when run in DIPLOID mode
hapmix
written by cshreya • cshreya
0 votes
4 replies
1.6K views
Snakemake expand(): using a helper function (zip) and imputing wildcards?
snakemake
updated by Jesse • Jesse • written by adixon3 • adixon3
0 votes
0 replies
484 views
Determing the effect of directionality on gene fusions
fusions star-fusion
written by Ben • Ben
0 votes
5 replies
3.5K views
failing to install rMATS
rmats
updated by Jeremy Leipzig Jeremy Leipzig • written by thomas.heigl.ibk • thomas.heigl.ibk
0 votes
7 replies
2.3K views
Unable to view BAM files in IGV
macos igv
updated by Pierre Lindenbaum Pierre Lindenbaum • written by N-may • N-may
0 votes
0 replies
812 views
Seeking Guidance on WGBS Analysis for F1-Hybrid Mapping
methylation bismark wgbs mapping hybrid
written by binaryCode • binaryCode
0 votes
5 replies
1.6K views
Is there an elegant way to deal with the version indicator in reference FASTA file
fasta refseq
updated by shenwei356 shenwei356 • written by Xiaokang • Xiaokang
0 votes
4 replies
2.0K views
VG giraffe autoindex and alignement mapping warning "Refusing to perform too-large rescue alignment"
variant calling pangenome giraffe vg
written by s_135 • s_135
0 votes
2 replies
1.0K views
statistical testing for MS/MS proteomics bulk samples
deg proteomics
updated by ATpoint ATpoint • written by QX • QX
1 vote
16 replies
3.0K views
Gatk haplotyper
tumor normal haplotyper gatk
updated by Michael Dondrup Michael Dondrup • written by prs • prs
0 votes
3 replies
1.7K views
Paired-end sequencing with inconsistent quality/number of reads
paired-end ngs star flowcell alignment
written by anissa • anissa
0 votes
0 replies
654 views
Mapping problem with bowtie2 paremeter --very-sensitive and --very-sensitive-local
mapping soil microbiome metagenomic
written by hophuquy0944 • hophuquy0944
0 votes
3 replies
1.7K views
Unable to register for MG-RAST
metagenomics mg-rast
updated by GenoMax GenoMax • written by naveedhasan2000 • naveedhasan2000
0 votes
2 replies
1.1K views
Comparing GSEA mutant data to wild type
python gene gsea r
written by conmul • conmul
0 votes
2 replies
1.1K views
GATK BaseQualityRecalibrator
snps bqsr variants reads gatk
written by ayeraselvan • ayeraselvan
0 votes
0 replies
484 views
Duplicates in TCGAanalyze_Normalization
r tcgaanalyze_normalization tcgabiolinks studio
written by Azra • Azra
2 votes
3 replies
1.2K views
Selecting DEGs for gene ontology using clusterprofiler and DESeq2
r deseq2 rnaseq
written by a.basitkhan1990 • a.basitkhan1990
0 votes
6 replies
1.8K views
Has this sequence really more then 70k perfect matches in the human genome?
blast
updated by i.sudbery i.sudbery • written by gernophil • gernophil
0 votes
0 replies
591 views
Long non-coding RNA target
target gene lncrna
written by zizigolu zizigolu
0 votes
2 replies
624 views
Alternative to RDP
taxonomy rdp
updated by GenoMax GenoMax • written by asdata • asdata
0 votes
0 replies
791 views
News: Multivariate Data Analysis with R and vegan course
multivariate ordination-methods pca pcoa
written by Physalia-courses Physalia-courses
0 votes
0 replies
458 views
Download serum miRNA data from TCGA
mirna serum download tcga
written by fatemekazemi446 • fatemekazemi446
1 vote
0 replies
1.3K views
Tutorial: How CCA alignment and cell label transfer work in Seurat
biology computational seurat bioinformatics scrnaseq
written by Ming Tommy Tang Ming Tommy Tang
0 votes
1 reply
906 views
Refseq1405.40 and hisat2-build (-ss and --exon)
hisat2-build
written by chrisk • chrisk
0 votes
1 reply
1.2K views
Job: Freelance Tutor for Mouse Gene Comparison
mouse
updated by Dunois • Dunois • written by yourgoodnabor • yourgoodnabor
0 votes
1 reply
1.0K views
Issue with longqc conda installation
longqc
updated by GenoMax GenoMax • written by Daniele • Daniele
0 votes
0 replies
508 views
MOFA2: Confidence Intervals // Unvertainty estimates for MOFA model
biostatistics mofa2
written by mario_de_manner • mario_de_manner
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