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0 votes
0 replies
557 views
How to extract the missing feature ( gene, CDS, ... when compare 2 gff3 file ?
gff3 compare maker annotation rap-db
written by Sony Nguyen • Sony Nguyen
1 vote
11 replies
3.4K views
How to determine whether it is 10x data
geo 10x sra
updated by Chris S. Chris S. • written by king • king
0 votes
0 replies
781 views
DROP - Detection of RNA Outliers Pipeline
aberrantexpression outlierdetection drop bulkrnaseq
written by Maverick • Maverick
1 vote
1 reply
841 views
HISAT2 human index and GTF file version incompatibility
index hisat2 gtf
updated by pinheirofabiano • pinheirofabiano • written by Rituriya • Rituriya
0 votes
3 replies
1.4K views
alignment to human transcriptome with Bowtie2
alignment
updated by swbarnes2 swbarnes2 • written by Meghan.T • Meghan.T
0 votes
1 reply
1.1K views
mappability regions
mappability region
updated by Alex Reynolds Alex Reynolds • written by heureuse • heureuse
0 votes
0 replies
667 views
News: Join Our Landscape Genomics Workshop in Lodz, Poland – January 20-24, 2025
sambada data-integration landscape-genomics
written by Physalia-courses Physalia-courses
0 votes
4 replies
1.7K views
Identifying Runs of Homozygosity and Inbreeding Coefficient from VCF File
snp vcf genomics
updated by Ram Ram • written by saamhasan55 • saamhasan55
0 votes
6 replies
2.9K views
Tools for Reference-Guided Assembly Using Nanopore Sequencing Reads
assembly nanopore reference-guided genome-assembly tools
updated by GenoMax GenoMax • written by pratikshaadagale39722 • pratikshaadagale39722
0 votes
1 reply
667 views
How to deal with substring in contigs in metagenomic research?
assembly metagenomic
updated by dthorbur dthorbur • written by hophuquy0944 • hophuquy0944
0 votes
5 replies
1.3K views
High quality genome assembly based on poor data with reference genome
genome assembly
updated by Michael Dondrup Michael Dondrup • written by Jason • Jason
0 votes
0 replies
759 views
how to convert hapmap genotype files (hmp.txt) to VCF format in Linux env.t?
snp vcf hapmap
updated by Ram Ram • written by abebe1423 • abebe1423
0 votes
1 reply
798 views
Pacbio scRNA-seq
ngs deg scrna-seq pacbio
updated by GenoMax GenoMax • written by SEO • SEO
0 votes
2 replies
755 views
Regarding reads number for mapping
rnaseq
updated by GenoMax GenoMax • written by SHIRUI • SHIRUI
0 votes
2 replies
849 views
Seeking Tool to Convert Chromosome Coordinates to cDNA Coordinates for Arabidopsis
cdna chromosome
updated by Ram Ram • written by remagen • remagen
0 votes
0 replies
617 views
Analyzing PBMC scATAC-seq Using Signac Error
atac-seq
written by Sohum • Sohum
0 votes
2 replies
1.3K views
getMappedEntrezIDs from missmethyl package R
r missmethyl cpg methylation gene
written by Rut_MDLV • Rut_MDLV
0 votes
2 replies
1.4K views
Identifying non-surjectable sites in a minigraph-cactus graph
vg
written by avril • avril
0 votes
2 replies
1.2K views
Issue with nf-core smRNAseq Pipeline Execution
nextflow smrna-seq
updated by colindaven colindaven • written by José Andrés • José Andrés
0 votes
7 replies
2.3K views
Uneven raw read counts per sample for ATAC-Seq differential analysis
atac-seq
written by marionette.kent • marionette.kent
0 votes
2 replies
930 views
Feature Selection for DNA methylation data
cancer feature-selection methylation
written by Ahmed • Ahmed
0 votes
2 replies
840 views
Gromacs
gromacs
updated by Ram Ram • written by Arbaz • Arbaz
0 votes
0 replies
1.0K views
Blog: The Complete Guide to Metatranscriptome Sequencing
rna
written by Novogene • Novogene
0 votes
2 replies
967 views
News: Course on Reproducibility Data Analysis with R
r github git reproducibility docker
written by Physalia-courses Physalia-courses
0 votes
0 replies
534 views
How to create a flower plot for pangenome data
flowerplot pangenome
written by Bushra Bibi Bushra Bibi
200 votes
40 replies
209K views
Tutorial: How to download raw sequence data from GEO/SRA
fastq sra bam geo
updated by geocarvalho geocarvalho • written by Obi Griffith Obi Griffith
0 votes
1 reply
1.1K views
Best protein imputation method when comparing knock-outs?
imputation proteomics mass-spectrometry ms lfq
updated by KABILAN • KABILAN • written by sebastian.gregoricchio • sebastian.gregoricchio
1 vote
1 reply
1.0K views
WGCNA: Why are my brown, yellow, and other modules not visible in the gene dendrogram?
r genes transcriptomics wgcna
updated by allingt • allingt • written by shubhankarpawar3 • shubhankarpawar3
0 votes
4 replies
2.1K views
Cytoscape - stringApp terms could not be mapped to any identifier
nodes terms stringapp cytoscape
written by Jordan • Jordan
0 votes
1 reply
779 views
Duplicate reads due to multiple db in kneaddata
multiple duplicate genomes kneaddata reads
updated by GenoMax GenoMax • written by noorehuma • noorehuma
0 votes
0 replies
757 views
Homer2 build new background error
homer homer2
written by ChuYi • ChuYi
3 votes
7 replies
2.8K views
Forum: How the field has changed in the last 5 years, and 25 years (up to 2024)
bioinformatics biology
updated by benformatics benformatics • written by Khue • Khue
0 votes
4 replies
1.2K views
How can I identify inflammatory genes from the Molecular signature database?
msigdb
written by Jaber • Jaber
0 votes
2 replies
1.6K views
What is the file format of RefSeq Curated Track in IGV?
ucsc-genome-browser igv
written by Anisur Rahman • Anisur Rahman
0 votes
1 reply
943 views
No over-represented GO terms, but plenty from GSEA?
enricher clusterprofiler
updated by dthorbur dthorbur • written by bioinfo2345 • bioinfo2345
2 votes
3 replies
2.9K views
Any reason to do MiSeq over NextSeq 2000?
miseq nextseq illumina metabarcoding
updated by GenoMax GenoMax • written by hjarnek • hjarnek
0 votes
2 replies
1.2K views
Program to demultiplex before to use DADA2
dada2 demultiplex metabarcoding
updated by hjarnek • hjarnek • written by domingues.pesca • domingues.pesca
1 vote
1 reply
983 views
Key-value pairs at the end of lines of gaf/paf files
gaf paf
updated by cmdcolin cmdcolin • written by guntul • guntul
0 votes
4 replies
1.6K views
coordinate vs contributions for the variables in PCA using FactoMineR
pca
updated by Bastien Hervé Bastien Hervé • written by QX • QX
0 votes
0 replies
613 views
immunedeconv for RNAseq data
meta-analysis rna-seq immunedeconv deseq2
written by a.stef.44 • a.stef.44
0 votes
10 replies
2.4K views
Genome Assembly Verification, Chimeric contigs
flye genome assembly fungus
updated by alex.zaccaron alex.zaccaron • written by SomeOne • SomeOne
0 votes
11 replies
6.3K views
Pseudobulk analysis using AggregateExpression()
seurat pseudobulk sum aggregateexpression
updated by adhisadi • adhisadi • written by JY • JY
0 votes
2 replies
861 views
error in DESeq2 Determines differentially expressed features from count tables
deseq2
updated by i.sudbery i.sudbery • written by razieamiri.1997 • razieamiri.1997
0 votes
0 replies
852 views
How to normalise multiple datasets together using GEO2R?
geo r normalisation geo2r microarray
written by Sai • Sai
0 votes
5 replies
2.7K views
gene ID to gene symbol in R
r
updated by Gordon Smyth Gordon Smyth • written by pinheirofabiano • pinheirofabiano
0 votes
4 replies
1.6K views
Directory provided does not exist
read10x
updated by Bastien Hervé Bastien Hervé • written by nuorain • nuorain
0 votes
3 replies
1.5K views
Error in as.unit(e2) : object is not coercible to a unit
r venn-diagram venn
updated by Ram Ram • written by otieno43 • otieno43
0 votes
0 replies
725 views
TCGAbiolinks: bug in the function TCGAanalyze_SurvivalKM
rstudio tcgabiolinks suvivalkm tcga
updated by Ram Ram • written by Azra • Azra
0 votes
3 replies
2.4K views
Why Are Transcripts Differentially Expressed but Not Genes in RNA-seq Analysis? — Confusion Around Transcript-Level Differential Expression
gene transcript count rsem
written by Cooper • Cooper
0 votes
0 replies
813 views
How to obtain shared peaks in DiffBind?
diffbind chip-seq
written by Thomas • Thomas
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