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0 votes
0 replies
594 views
Skilled occupation list austrlia
australia
written by anasjamshed 14
0 votes
1 reply
718 views
T2T assembly supporting tools
telomere t2t assembly genome
written by eva_u 3
0 votes
12 replies
3.8K views
Is a SLURM job array submission suitable for parallelizing multiple FASTQ file downloads?
parallel-computing hpc slurm fastq
updated by Dave Carlson 223 • | written by kalavattam 85
0 votes
1 reply
1.2K views
Cut&Run: E-coli spike-in
normalization cut-and-run
updated by Ram 4.5K • | written by kim 1
0 votes
0 replies
846 views
Issues using reduceSimMatrix with a custom annotation
enrichment go gosemsim rrvgo annotationforge
written by daccar98 0
0 votes
2 replies
1.6K views
Perform DESeq2 with One factor with three levels vs Two factor with two levels
deseq2
updated by swbarnes2 1.5K • | written by وفاء 0
0 votes
7 replies
1.7K views
Combining two closely related bacterial annotated genomes to analyze as one pooled group
genomes rnaseq
updated by i.sudbery 2.3K • | written by brayas13 0
1 vote
4 replies
3.9K views
nf-core/rnaseq, problem with ensembl reference
nfcore nextflow ensembl rnaseq
updated by Kai 0 • | written by Filip 1
0 votes
0 replies
753 views
VG STATS: 2000 Properly Paired Inquiry
samtools variation-graph sequencing vg
updated by Ram 4.5K • | written by abdelf6 0
0 votes
0 replies
536 views
Database for peptide drugs
database
written by Jiayi Yang 0
0 votes
3 replies
2.1K views
identify transposable elements in iso-seq data
te iso-seq repeatmasker
updated by lieven.sterck 1.6K • | written by triplee0305 2
5 votes
5 replies
27K views
Herald: The Biostar Herald for Monday, November 04, 2024
herald
updated by Dunois 301 • | written by Biostar 380
2 votes
1 reply
827 views
Creating pathogen test database from nt NCBI
blast ncbi metagenomics
updated by GenoMax 16K • | written by r.d.jongh 2
0 votes
1 reply
818 views
Need coding help for GO enrichment analysis for non model alga with topGO
r enrichment topgo go
updated by Dunois 301 • | written by rhossen 0
1 vote
1 reply
2.8K views
Which Tool is Better for Genome Polishing Using Illumina and Nanopore Reads: Polypolish vs. Pilon and Racon vs. Medaka?
medaka assembly racon polypolish pilon
updated by Dunois 301 • | written by SomeOne 33
0 votes
0 replies
661 views
Calculate the Distribution of Peaks in 5'UTR, 3'UTR, and CDS of Transcripts Using R
r rna-seq granges
written by octpus616 14
0 votes
2 replies
937 views
Duplication removal of RNA-seq fastq files during the process of annotation
duplication rna-seq annotation
written by Abieskawa 2
0 votes
2 replies
1.6K views
PolyA tail trimming in Nanopore Direct RNA Sequencing reads
nanopore apa
written by baibhu1234 6
0 votes
1 reply
673 views
fail to download data from seurat
r seurat
updated by yura.grabovska 94 • | written by 宇 0
0 votes
0 replies
633 views
DiffBind ATAC-Seq Profile Plot Question About Identifying Sites
diffbind profileplot atac-seq
written by B.N. 1
1 vote
1 reply
1.4K views
GWAS from direct samples... is imputation necessary?
imputation plink gwas
updated by LChart 518 • | written by sabrilo171 2
0 votes
1 reply
929 views
WGCNA unpaired trait/expression data
wgcna
updated by LChart 518 • | written by nika13 0
0 votes
3 replies
1.5K views
ChIP-seq reads trimming
trimming chipseq fastp alignment bowtie2
updated by GenoMax 16K • | written by sk_24 2
1 vote
6 replies
2.5K views
What is the best backgrowun gene list to choose for GSEA, ORA, and for KOBAS
rna-seq
written by Pegasus 13
0 votes
1 reply
1.1K views
How to normalise the RNAseq data without spike in?
nanopore spike-in rnaseq
written by Mo 5
0 votes
4 replies
1.8K views
Emphasizing biological effect of candidate variants used in polygenic risk score
prs gwas polygenicriskscore
written by K Lee 2
0 votes
0 replies
731 views
News: Genomic Data Visualisation with R (online course)
r ggplot2 datavisualization
written by Physalia-courses 281
0 votes
0 replies
573 views
Easy way to annotate CDSs in GFF3 with HGNC gene symbol (and transcript name?)
gff3 gtf
written by gernophil 15
0 votes
3 replies
1.8K views
Are there any preferred trajectory/pseudotime analyses that do not require an arbitrary start point?
scrna-seq pseudotime monocle scvelo trajectory-analysis
written by nathansuek 2
0 votes
23 replies
5.2K views
error with Tximport when txOut = TRUE
tximport r
updated by Ram 4.5K • | written by mbansal 0
0 votes
1 reply
778 views
UMI tools to extract Paired end miRNA reads
paired umi_extract
updated by biofalconch 132 • | written by otieno43 4
0 votes
1 reply
995 views
Discrepancy Between Genus and Phylum Level Results in ANCOMBC2
differential-abundance
updated by andres.firrincieli 412 • | written by benkosta 0
0 votes
1 reply
1.1K views
Differential binding analysis between different TFs
differential-binding chip-seq transcription-factor
updated by Ming Tommy Tang 469 • | written by Alexandra 0
1 vote
0 replies
991 views
News: St. Jude Graduate School of Biomedical Sciences Launch of MS ABDS Program
education
written by rachel.mccollough 1
4 votes
0 replies
26K views
Herald: The Biostar Herald for Friday, November 01, 2024
herald
written by Biostar 380
0 votes
0 replies
549 views
Why does the normal tissue increase while I try to select the tumor purity great than 60%
tumor-purity tcga
updated by Ram 4.5K • | written by nuorain 4
0 votes
4 replies
2.1K views
Seurat - unordered cells
r seurat
written by solo.albif 0
0 votes
1 reply
898 views
GISTIC 2.0 parameter change not happening
cnv gistic
updated by Ram 4.5K • | written by Swattik 0
0 votes
1 reply
1.1K views
How to find the adapter sequence of an RNAseq dataset?
fastqc trimming adapter rnaseq
updated by GenoMax 16K • | written by Maryam 0
0 votes
4 replies
1.4K views
Compare Two Sigle-cell Sample for Differentially Expressed Genes (DEGs). How?
single-cell
updated by Ram 4.5K • | written by wangziwei0010 3
0 votes
2 replies
994 views
Repeat CT in overrepresented sequences
scrna fastqc overrepresented sequences
updated by allingt 4 • | written by Analeigh 0
0 votes
1 reply
883 views
Can a read be aligned more than once?
alignment gaf read sam
updated by GenoMax 16K • | written by guntul 4
0 votes
6 replies
2.2K views
What is a genomic range that would almost always get decent WGS coverage but is never covered by WES?
wes wgs
updated by i.sudbery 2.3K • | written by Jeremy Leipzig 2.3K
0 votes
1 reply
1.3K views
Using NumReads column of quants.genes.sf file to build DESeq2 input
r deseq2 rna-seq salmon
updated by i.sudbery 2.3K • | written by Ezequiel 1
0 votes
1 reply
735 views
SCE object acting strangley
r sce seurat singlecellexperiment
updated by Ram 4.5K • | written by wykpenguin 0
0 votes
5 replies
1.8K views
why I get "Running twoBitToFa failed" when loading chopchop
chopchop twobittofa crispr
updated by GenoMax 16K • | written by WYZ1120zzh 0
0 votes
0 replies
1.0K views
TCGA differential DNA methylation analysis 450K best practices
methylation hm450k differential
written by Brassicka 0
0 votes
3 replies
1.2K views
Conversion from .lib to .faa file
fasta blast
updated by Ram 4.5K • | written by watermicrogirl 0
0 votes
2 replies
1.1K views
Inquiry about depth of coverage and copy number variation
number copy cnv sequencing depth variation
written by Chen 0
0 votes
1 reply
830 views
Finding Differential Phosphosites in TMT Phosphoproteomics Data
deqms mass phosphoproteomics proteomics spec
updated by ATpoint 9.1K • | written by jesswhitts 0
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