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0 votes
1 reply
986 views
Magnesium ion in a post-docking adjustment
docking magnesium ion
updated by dthorbur 350 • | written by Rodolfo Adrián 0
0 votes
4 replies
1.9K views
R encountering fatal error and quitting the session
r randomforestsrc random-forest
updated by Dunois 301 • | written by anjalivasudevan98 4
0 votes
1 reply
973 views
scRNA seq dissimilarity plot
anosim scrna-seq dissimilarity
updated by Bastien Hervé 680 • | written by carolofharvest 6
0 votes
6 replies
2.2K views
dittoHeatmap; adding column labels on the heatmap
pheatmap complexheatmap dittoheatmap
updated by jared.andrews07 1.9K • | written by Varun Gupta 129
0 votes
3 replies
1.5K views
IDAT to FASTA workflow
plink r idat fasta gwas
updated by GenoMax 16K • | written by sabrilo171 2
0 votes
7 replies
2.4K views
GATK - Output differences in Calls when Split by chromosome intervals and without splitting
gatk picard mergevcf vcftools
written by Maverick 1
0 votes
0 replies
817 views
mageck mle design matrix
crispr mageck-mle design-matrix pooled-screen
written by Assa Yeroslaviz 197
0 votes
2 replies
1.6K views
After subsetting a seurat object number of variable features is wrong.
findvariablefeatures seurat subset
updated by Ram 4.5K • | written by Assa Yeroslaviz 197
0 votes
1 reply
1.0K views
PyDeseq2 - InvalidIndexError
python rna-seq pandas pydeseq2 deseq2
updated by Dunois 301 • | written by tmanjonas 0
0 votes
0 replies
1.0K views
Finding the IC50 from GraphPad Prism
ic50
written by camiinnocente 0
0 votes
0 replies
525 views
Pipelines for CAZenzymes, COG, KO, MetaCyc, Pfam and TIGRFAM analysis
picrust2 metagenomic micfunpred
updated by Ram 4.5K • | written by Petrônio 0
0 votes
1 reply
1.2K views
Gene performance/coverage calculation methodology in .bam files using samtools
samtools ngs coverage
updated by Ram 4.5K • | written by slzr_ 1
1 vote
3 replies
2.6K views
Error in CIBERSORTx ($ operator is invalid for atomic vectors)
rna-seq cibersortx deconvolution cibersort
updated by jurriaanjanssen 0 • | written by star 1
0 votes
12 replies
9.6K views
Error in CIBERSORTx
rna-seq cibersort lm22
updated by jurriaanjanssen 0 • | written by Manav 0
0 votes
5 replies
28K views
PC3 & PC2 using plotPCA function in R
r plotpca pca
updated by Ram 4.5K • | written by User000 75
0 votes
0 replies
518 views
(vg rna) some transcripts have multiple projections on haplotypes and abnormal length growth
vg
written by Wenhai 0
0 votes
1 reply
1.0K views
Minor Allele Frequency Calculation for 23andMe data
maf gwas pgs
updated by barslmn 245 • | written by Priyatam 0
0 votes
2 replies
1.0K views
De novo assembly with more genome size than expected
illumina sequencing assembly genomics
updated by GenoMax 16K • | written by Isidro 0
0 votes
2 replies
2.1K views
Why use Hi-C and/or Bionano for scaffolding when Nanopore sequencing exists?
wgs hic sequencing nanopore genomics
updated by shelkmike 201 • | written by Mark 6
0 votes
7 replies
3.0K views
HTSeq-count vs. FeatureCounts: Significant Difference in Results
featurecounts htseq-count
written by Dora 1
1 vote
0 replies
607 views
Enironmental metabolic ability - metagenomic assembly or MAGs
mags environmental microbiology metagenomes
updated by GenoMax 16K • | written by sipeskm 1
12 votes
5 replies
4.1K views
Tutorial: removeBatchEffect explained using base R linear models
removebatcheffects limma batch-effect
updated by SamGG 15 • | written by nhaus 44
1 vote
6 replies
3.4K views
Question: can not obtain DESeq2 results
rna-seq deseq2
updated by Jack 1 • | written by zjxia 1
1 vote
0 replies
448 views
Stable coordinates in gaf files?
gfa gaf rgfa
written by Uveyik 8
0 votes
2 replies
1.7K views
Dealing with outliers for differential expression in proteomics
proteomics pca dea outliers limma
updated by ATpoint 9.1K • | written by Jorge HB 0
0 votes
1 reply
741 views
Differential expression genes(downstream analysis)
bulk-rnaseq
updated by pinheirofabiano 14 • | written by odi 3
0 votes
1 reply
1.0K views
RNAhybrid + svm_light for miRNA target prediction
microrna svm target rnahybrid
updated by bingyanzheng18 0 • | written by Lucrezia 0
0 votes
0 replies
665 views
How do I set the RNAhybrid parameters to get more accurate and as many results as possible
rnahybrid mirna_target_genes_prediction
written by bingyanzheng18 0
0 votes
2 replies
896 views
Trinity analysis error
trinity
written by ongchip 0
0 votes
0 replies
783 views
CIBERSORTx error (error in rep(2, size * length(cells) -1)) : invalid 'times' argument
cibersortx cibersort scrna-seq rna-seq deconvolution
written by Amairani 0
0 votes
2 replies
1.1K views
Reconciling old crystallography papers with modern sequencing data
pdb proteomics
updated by Wayne 208 • | written by John Ma 31
0 votes
0 replies
454 views
Evaluate homopolymeric tracts in a set of microbial genomes
genomes genomics
updated by Ram 4.5K • | written by Madde 2
0 votes
5 replies
1.2K views
Coverage/depth of merged bam files
samtools
updated by GenoMax 16K • | written by slzr_ 1
0 votes
1 reply
981 views
Multiple Synteny Plot using MCScanX.
synteny mcscanx
updated by alex.zaccaron 48 • | written by a.bibek52 1
0 votes
0 replies
811 views
News: Join our Eukaryotic Genome Assembly Using PacBio and Hi-C course, taking place online from 4-8 November 2024!
pacbio genome-assembly hic long-reads
updated by Ram 4.5K • | written by Physalia-courses 281
0 votes
5 replies
1.6K views
Distinguishing gfa and rgfa files
gfa rgfa
updated by GenoMax 16K • | written by guntul 4
0 votes
4 replies
1.2K views
Help with Generating Clustered Heatmap from Large Datasets
heatmap
updated by Mensur Dlakic 3.0K • | written by ArtiCore 0
0 votes
2 replies
1.9K views
Pangenome analysis
roary pangenome bakta prokka
written by erinda 1
0 votes
1 reply
785 views
Alternative to BLAST with N and mismatches as input
blast
updated by lieven.sterck 1.6K • | written by gernophil 15
0 votes
0 replies
1.1K views
Best Practices for Handling Negative Values in MFI Data after log base 2 transformation with median normalization
normalization statistics log-transformation
updated by Ram 4.5K • | written by Alaa Elsaghir 0
0 votes
3 replies
1.3K views
DeNovo Assembly - Assigning gene description
braker2 denovo-assembly masurca wgs
updated by Ram 4.5K • | written by Sowmya Pulapet 7
0 votes
16 replies
4.1K views
Question about edgeR p-values/FDR values
edger
written by Ronin 1
0 votes
1 reply
923 views
Plot query cells on top of reference cells in UMAP
r integration seurat
updated by Bastien Hervé 680 • | written by saicchan 0
0 votes
2 replies
940 views
Is it necessary to adjust genome to the same strand direction?
strand-direction vg
written by Yao 3
0 votes
2 replies
871 views
xCell output and immune cell ratio
statistics immunedeconv xcell
written by a.stef.44 1
0 votes
1 reply
924 views
Spades Genome Assembly
genome spades assembly
updated by dthorbur 350 • | written by SomeOne 33
0 votes
2 replies
889 views
Error in Trinity installation
trinity
updated by Ram 4.5K • | written by ongchip 0
0 votes
9 replies
5.8K views
Bam files not accepted in dba.count
samtools diffbind dba.count bam
updated by katie_kat 0 • | written by corinne_hutfilz 0
0 votes
0 replies
590 views
How to normalize gene abundance from long read metagenomic data?
normalization metagenomics long-read gene-abundance
written by Adrián 0
0 votes
0 replies
795 views
SILVA vs PR2 vs both for 18S metabarcoding?
taxonomy 18s metabarcoding
written by hjarnek 2
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