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0 votes
0 replies
709 views
Your suggestion how to annotate cell type from visium data
spatial-transcriptomics
written by Chris 36
0 votes
0 replies
364 views
HAPMIX : interpretation of the 16 probabilities generated when run in DIPLOID mode
hapmix
written by cshreya 0
0 votes
4 replies
1.7K views
Snakemake expand(): using a helper function (zip) and imputing wildcards?
snakemake
updated by Jesse 94 • | written by adixon3 0
0 votes
0 replies
496 views
Determing the effect of directionality on gene fusions
fusions star-fusion
written by Ben 3
0 votes
5 replies
3.6K views
failing to install rMATS
rmats
updated by Jeremy Leipzig 2.3K • | written by thomas.heigl.ibk 2
0 votes
7 replies
2.4K views
Unable to view BAM files in IGV
macos igv
updated by Pierre Lindenbaum 17K • | written by N-may 1
0 votes
0 replies
832 views
Seeking Guidance on WGBS Analysis for F1-Hybrid Mapping
methylation bismark wgbs mapping hybrid
written by binaryCode 1
0 votes
5 replies
1.6K views
Is there an elegant way to deal with the version indicator in reference FASTA file
fasta refseq
updated by shenwei356 870 • | written by Xiaokang 8
0 votes
4 replies
2.0K views
VG giraffe autoindex and alignement mapping warning "Refusing to perform too-large rescue alignment"
variant calling pangenome giraffe vg
written by s_135 1
0 votes
2 replies
1.0K views
statistical testing for MS/MS proteomics bulk samples
deg proteomics
updated by ATpoint 9.1K • | written by QX 9
1 vote
16 replies
3.0K views
Gatk haplotyper
tumor normal haplotyper gatk
updated by Michael Dondrup 5.6K • | written by prs 2
0 votes
3 replies
1.7K views
Paired-end sequencing with inconsistent quality/number of reads
paired-end ngs star flowcell alignment
written by anissa 0
0 votes
0 replies
671 views
Mapping problem with bowtie2 paremeter --very-sensitive and --very-sensitive-local
mapping soil microbiome metagenomic
written by hophuquy0944 0
0 votes
3 replies
1.7K views
Unable to register for MG-RAST
metagenomics mg-rast
updated by GenoMax 16K • | written by naveedhasan2000 1
0 votes
2 replies
1.1K views
Comparing GSEA mutant data to wild type
python gene gsea r
written by conmul 0
0 votes
2 replies
1.2K views
GATK BaseQualityRecalibrator
snps bqsr variants reads gatk
written by ayeraselvan 1
0 votes
0 replies
490 views
Duplicates in TCGAanalyze_Normalization
r tcgaanalyze_normalization tcgabiolinks studio
written by Azra 1
2 votes
3 replies
1.3K views
Selecting DEGs for gene ontology using clusterprofiler and DESeq2
r deseq2 rnaseq
written by a.basitkhan1990 6
0 votes
6 replies
1.8K views
Has this sequence really more then 70k perfect matches in the human genome?
blast
updated by i.sudbery 2.3K • | written by gernophil 15
0 votes
0 replies
605 views
Long non-coding RNA target
target gene lncrna
written by zizigolu 438
0 votes
2 replies
630 views
Alternative to RDP
taxonomy rdp
updated by GenoMax 16K • | written by asdata 0
0 votes
0 replies
807 views
News: Multivariate Data Analysis with R and vegan course
multivariate ordination-methods pca pcoa
written by Physalia-courses 281
0 votes
0 replies
461 views
Download serum miRNA data from TCGA
mirna serum download tcga
written by fatemekazemi446 0
1 vote
0 replies
1.3K views
Tutorial: How CCA alignment and cell label transfer work in Seurat
biology computational seurat bioinformatics scrnaseq
written by Ming Tommy Tang 469
0 votes
1 reply
925 views
Refseq1405.40 and hisat2-build (-ss and --exon)
hisat2-build
written by chrisk 0
0 votes
1 reply
1.2K views
Job: Freelance Tutor for Mouse Gene Comparison
mouse
updated by Dunois 301 • | written by yourgoodnabor 0
0 votes
1 reply
1.0K views
Issue with longqc conda installation
longqc
updated by GenoMax 16K • | written by Daniele 0
0 votes
0 replies
520 views
MOFA2: Confidence Intervals // Unvertainty estimates for MOFA model
biostatistics mofa2
written by mario_de_manner 2
0 votes
0 replies
569 views
How to extract the missing feature ( gene, CDS, ... when compare 2 gff3 file ?
gff3 compare maker annotation rap-db
written by Sony Nguyen 2
1 vote
11 replies
3.4K views
How to determine whether it is 10x data
geo 10x sra
updated by Chris S. 35 • | written by king 0
0 votes
0 replies
809 views
DROP - Detection of RNA Outliers Pipeline
aberrantexpression outlierdetection drop bulkrnaseq
written by Maverick 1
1 vote
1 reply
850 views
HISAT2 human index and GTF file version incompatibility
index hisat2 gtf
updated by pinheirofabiano 14 • | written by Rituriya 5
0 votes
3 replies
1.4K views
alignment to human transcriptome with Bowtie2
alignment
updated by swbarnes2 1.5K • | written by Meghan.T 1
0 votes
1 reply
1.2K views
mappability regions
mappability region
updated by Alex Reynolds 3.6K • | written by heureuse 1
0 votes
0 replies
680 views
News: Join Our Landscape Genomics Workshop in Lodz, Poland – January 20-24, 2025
sambada data-integration landscape-genomics
written by Physalia-courses 281
0 votes
4 replies
1.7K views
Identifying Runs of Homozygosity and Inbreeding Coefficient from VCF File
snp vcf genomics
updated by Ram 4.5K • | written by saamhasan55 3
0 votes
6 replies
3.0K views
Tools for Reference-Guided Assembly Using Nanopore Sequencing Reads
assembly nanopore reference-guided genome-assembly tools
updated by GenoMax 16K • | written by pratikshaadagale39722 0
0 votes
1 reply
678 views
How to deal with substring in contigs in metagenomic research?
assembly metagenomic
updated by dthorbur 350 • | written by hophuquy0944 0
0 votes
5 replies
1.3K views
High quality genome assembly based on poor data with reference genome
genome assembly
updated by Michael Dondrup 5.6K • | written by Jason 0
0 votes
0 replies
785 views
how to convert hapmap genotype files (hmp.txt) to VCF format in Linux env.t?
snp vcf hapmap
updated by Ram 4.5K • | written by abebe1423 0
0 votes
1 reply
810 views
Pacbio scRNA-seq
ngs deg scrna-seq pacbio
updated by GenoMax 16K • | written by SEO 0
0 votes
2 replies
777 views
Regarding reads number for mapping
rnaseq
updated by GenoMax 16K • | written by SHIRUI 1
0 votes
2 replies
861 views
Seeking Tool to Convert Chromosome Coordinates to cDNA Coordinates for Arabidopsis
cdna chromosome
updated by Ram 4.5K • | written by remagen 1
0 votes
0 replies
628 views
Analyzing PBMC scATAC-seq Using Signac Error
atac-seq
written by Sohum 0
0 votes
2 replies
1.3K views
getMappedEntrezIDs from missmethyl package R
r missmethyl cpg methylation gene
written by Rut_MDLV 0
0 votes
2 replies
1.4K views
Identifying non-surjectable sites in a minigraph-cactus graph
vg
written by avril 0
0 votes
2 replies
1.2K views
Issue with nf-core smRNAseq Pipeline Execution
nextflow smrna-seq
updated by colindaven 844 • | written by José Andrés 0
0 votes
7 replies
2.3K views
Uneven raw read counts per sample for ATAC-Seq differential analysis
atac-seq
written by marionette.kent 0
0 votes
2 replies
946 views
Feature Selection for DNA methylation data
cancer feature-selection methylation
written by Ahmed 0
0 votes
2 replies
847 views
Gromacs
gromacs
updated by Ram 4.5K • | written by Arbaz 0
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