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Blog: The Complete Guide to Metatranscriptome Sequencing
rna
written by Novogene 54
0 votes
2 replies
994 views
News: Course on Reproducibility Data Analysis with R
r github git reproducibility docker
written by Physalia-courses 281
0 votes
0 replies
542 views
How to create a flower plot for pangenome data
flowerplot pangenome
written by Bushra Bibi 8
200 votes
40 replies
209K views
Tutorial: How to download raw sequence data from GEO/SRA
fastq sra bam geo
updated by geocarvalho 40 • | written by Obi Griffith 2.0K
0 votes
1 reply
1.1K views
Best protein imputation method when comparing knock-outs?
imputation proteomics mass-spectrometry ms lfq
updated by KABILAN 13 • | written by sebastian.gregoricchio 3
1 vote
1 reply
1.0K views
WGCNA: Why are my brown, yellow, and other modules not visible in the gene dendrogram?
r genes transcriptomics wgcna
updated by allingt 4 • | written by shubhankarpawar3 1
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4 replies
2.1K views
Cytoscape - stringApp terms could not be mapped to any identifier
nodes terms stringapp cytoscape
written by Jordan 0
0 votes
1 reply
787 views
Duplicate reads due to multiple db in kneaddata
multiple duplicate genomes kneaddata reads
updated by GenoMax 16K • | written by noorehuma 0
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0 replies
765 views
Homer2 build new background error
homer homer2
written by ChuYi 0
3 votes
7 replies
2.9K views
Forum: How the field has changed in the last 5 years, and 25 years (up to 2024)
bioinformatics biology
updated by benformatics 426 • | written by Khue 3
0 votes
4 replies
1.3K views
How can I identify inflammatory genes from the Molecular signature database?
msigdb
written by Jaber 3
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2 replies
1.6K views
What is the file format of RefSeq Curated Track in IGV?
ucsc-genome-browser igv
written by Anisur Rahman 8
0 votes
1 reply
959 views
No over-represented GO terms, but plenty from GSEA?
enricher clusterprofiler
updated by dthorbur 350 • | written by bioinfo2345 4
2 votes
3 replies
3.0K views
Any reason to do MiSeq over NextSeq 2000?
miseq nextseq illumina metabarcoding
updated by GenoMax 16K • | written by hjarnek 2
0 votes
2 replies
1.2K views
Program to demultiplex before to use DADA2
dada2 demultiplex metabarcoding
updated by hjarnek 2 • | written by domingues.pesca 0
1 vote
1 reply
1.0K views
Key-value pairs at the end of lines of gaf/paf files
gaf paf
updated by cmdcolin 448 • | written by guntul 4
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4 replies
1.7K views
coordinate vs contributions for the variables in PCA using FactoMineR
pca
updated by Bastien Hervé 680 • | written by QX 9
0 votes
0 replies
640 views
immunedeconv for RNAseq data
meta-analysis rna-seq immunedeconv deseq2
written by a.stef.44 1
0 votes
10 replies
2.5K views
Genome Assembly Verification, Chimeric contigs
flye genome assembly fungus
updated by alex.zaccaron 48 • | written by SomeOne 33
0 votes
11 replies
6.5K views
Pseudobulk analysis using AggregateExpression()
seurat pseudobulk sum aggregateexpression
updated by adhisadi 0 • | written by JY 0
0 votes
2 replies
869 views
error in DESeq2 Determines differentially expressed features from count tables
deseq2
updated by i.sudbery 2.3K • | written by razieamiri.1997 0
0 votes
0 replies
863 views
How to normalise multiple datasets together using GEO2R?
geo r normalisation geo2r microarray
written by Sai 0
0 votes
5 replies
2.7K views
gene ID to gene symbol in R
r
updated by Gordon Smyth 916 • | written by pinheirofabiano 14
0 votes
4 replies
1.7K views
Directory provided does not exist
read10x
updated by Bastien Hervé 680 • | written by nuorain 4
0 votes
3 replies
1.5K views
Error in as.unit(e2) : object is not coercible to a unit
r venn-diagram venn
updated by Ram 4.5K • | written by otieno43 4
0 votes
0 replies
747 views
TCGAbiolinks: bug in the function TCGAanalyze_SurvivalKM
rstudio tcgabiolinks suvivalkm tcga
updated by Ram 4.5K • | written by Azra 1
0 votes
3 replies
2.4K views
Why Are Transcripts Differentially Expressed but Not Genes in RNA-seq Analysis? — Confusion Around Transcript-Level Differential Expression
gene transcript count rsem
written by Cooper 0
0 votes
0 replies
823 views
How to obtain shared peaks in DiffBind?
diffbind chip-seq
written by Thomas 0
0 votes
0 replies
1.1K views
Job: Fall 2025 Comparative Biology PhD program and Graduate Ph.D. Fellowships, American Museum of Natural History
fellowships graduate-student ph.d.
written by Info-rggs 2
0 votes
3 replies
1.2K views
Remove a specific DNA sequence from the middle of sequencing reads
filtering trimming fastq
updated by GenoMax 16K • | written by Andrea.Wall 1
0 votes
2 replies
867 views
Highly skewed distribution of differentially expressed (DE) genes
r rnaseq deseq2
updated by LChart 518 • | written by Maria 0
0 votes
9 replies
1.9K views
Differential expression analysis between groups with varying cell proportions
scrna-seq seurat pseudobulk
updated by Bastien Hervé 680 • | written by AB 39
0 votes
1 reply
602 views
QIIME2 artifact in galaxy
help
updated by GenoMax 16K • | written by mbyec18 0
0 votes
2 replies
1.1K views
RNA-seq heatmaps: effective length, RPKM vs. CPM
edger rna-seq
updated by ATpoint 9.1K • | written by bioinfo2345 4
0 votes
4 replies
1.2K views
The definition of a gene
gene lncrna transcript
written by zizigolu 438
0 votes
7 replies
1.6K views
Extracting single chromosome from WGS cram/bam files before downloading
vntr 1kg hgdp sgdp wgs
updated by Pierre Lindenbaum 17K • | written by berndmann 0
0 votes
0 replies
441 views
Performing sex-stratified analysis using regenie
regenie
updated by Ram 4.5K • | written by derycine 0
0 votes
1 reply
790 views
variant calling through gatk
variant-calling vcf workflow gatk
written by ashaneev07 5
0 votes
2 replies
1.0K views
Downloading Raw Reads
reads rna
updated by colindaven 844 • | written by Jamie 0
0 votes
1 reply
684 views
Good Dotplots for homogenous data (Seurat)
seurat dotplot
updated by yura.grabovska 94 • | written by carolofharvest 6
0 votes
1 reply
1.2K views
1000 genome dataset download
admixture 1000genome iadmix fastngsadmix plink
updated by chrchang523 1.1K • | written by Soohyun 0
0 votes
2 replies
1.1K views
Immunedeconv CIBERSORT
p-value immunedeconv cibersort
written by dy001 0
0 votes
7 replies
2.6K views
errors in installing picard
picard
written by Meghan.T 1
0 votes
5 replies
1.6K views
Bulk RNA seq PCA plot issues
rna-seq pca
written by karlensberg 0
0 votes
0 replies
641 views
News: Upcoming November Courses – Enhance Your Skills in Bioinformatics and Data Analysis
population-genomics scrna-seq rna-seq metagenomics genome-assembly
written by Physalia-courses 281
0 votes
0 replies
481 views
SVA with intercept only
sva batch-correction
updated by Ram 4.5K • | written by IM 0
0 votes
2 replies
1.1K views
Problem in calling peak by MACS3
macs3
updated by ATpoint 9.1K • | written by daffodil 1
0 votes
1 reply
2.1K views
Using TCGABioLinks to query multiple cancer studies
rna-seq r tcga
updated by GenoMax 16K • | written by ivykosater 0
0 votes
1 reply
1.4K views
News: Online Workshop - Bioinformatics Pipeline Development with Nextflow (November 13-15, 2024)
workshop nextflow rna-seq
written by ecSeq Bioinformatics 9
0 votes
1 reply
833 views
Merging BAM files after alignment or restarting the workflow?
bam alignment
updated by GenoMax 16K • | written by stanmih2 0
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