I have GWAS analysis in the ADNI dataset (WGS CASAVA Illumina software dataset). I have GWAS analysis using the plink tool in QC, but alzheimer …

I have used this command to convert .bgen file to vcf format for my imputed chromosome genotype data bgenix -g ukb_imp_chr${CHR}_v3.bgen \ -i ukb_imp_chr${CHR}_v3.bgen.bgi \ …

Dear All, I have vcf file with me and I want to convert this vcf file to vcf.gz format. Please help me regarding this. I …

So, I've got a VCF file of my whole genome sequence. I've used vcftools and plink to convert it into a bed file I merge …

How to convert vcf files to joinmap format? I have a vcf file containing SNPs from parents and F1 offspring. I need to convert this …

Hi, I have genotyping file "x1.txt"with the below header: SNP Name Sample ID Allele1 - Top Allele2 - Top GC Score SNP chr1:109457160 2 C …

Hi Biostars people, I want to use splitstree 4 to do some hybridization analysis and build tree using my SNP data. As an input file, …

<p>I converted 23andme raw snp data to vcf format for 750 individuals and all of them have same rsnpid&#39;s. Then I convert them to gds …

<p>Dear All,</p> <p>Is there any script available that will help me to convert the VarScan output in .txt format to .vcf format which I can …

<p>Dear all, I have a .txt file (includes Chrom, Position, SnpId, Genotype) from Affymetrix Genotyper Console (Affymetrix SNP Array 6.0). Normally we put this into …