I have genotype snp hmp.txt file format. I need to merge this file with another VCF file format. So help me how to convert the …

Hello, I have bed, bim, fam files. I used the tool KING to infer relations and find parents offspring. now I have parents and children …

Hello, I have cell free DNA of 5 samples in VCF file format, I want to plot the shared variants between all the samples in …

Hello everyone, I would like to exclude SNPs inherited from parents given offspring, in particular, i have VCF files generated with Haplotype caller for Father, …

Hi all, I have a simple radseq data: parents and multiples offsprings. I used Stacks to call SNPs and I am looking to estimate recombination …

Hi, I have a CSV file containing IDs SNPs information. I want to convert a CSV file to PED format using PLINK Please help!!!

Please how do I use this expression to convert imputed snps data in dosage format to VCF format java -jar beagle2vcf.jar [chrom] [markers] [bgl] [missing] …

Hi, I need to use JoinMap for linkage map construction from GBS SNPs data. I need to get genotype matrix prior loading into the JoinMap. …

Hi everyone. I am newbie in bioinformatics, PLINK and bio linux. Now I've CNV, genome, genotyping, Indels, SNPs, SV files in .vcf format. I would …

I have a VCF file containing SNPs called from a trio (two parents and one child). I was wondering what format should I follow for …