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VCF to binary files

Hi everyone. I am newbie in bioinformatics, PLINK and bio linux. Now I've CNV, genome, genotyping, Indels, SNPs, SV files in .vcf format. I would like to convert these file into .map and .ped formats. For .ped I need 6 columns and I knew that I had to create myself in biolinux(is it right?). I need help to enlighten me how to proceed. I have been trapped in this state for 3 days now and I still can't find a clue.

snp
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updated by Matteo Schiavinato Matteo Schiavinato • written by dr.kthiha82 • dr.kthiha82

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There was already this question on BioStars some time ago. Hope it helps! converting vcf file to plink ped/map format while filtering the snps

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written by Matteo Schiavinato Matteo Schiavinato

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