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Matteo Schiavinato
Matteo Schiavinato
Reputation:
3,690
Joined:
9.7 years ago
Last seen:
1.6 years ago
Location:
Barcelona - BSC
Google Scholar:
Schiavinato M
Twitter:
schmat_90
Latest posts by user
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Answer: Answer: Is there a way to use CNVkit without a reference from normal samples?
written by Matteo Schiavinato Matteo Schiavinato
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Comment: Comment: Any tools converting Genbank format to GFF3 format?
written by Matteo Schiavinato Matteo Schiavinato
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Comment: Comment: Best set of nucmer mapping parameters for genome vs genome alignment
written by Matteo Schiavinato Matteo Schiavinato
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1 reply
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Comment: Comment: Converting MUMmer snps file to a real VCF file
written by Matteo Schiavinato Matteo Schiavinato
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869 views
Tool: Manticore: a software to extract the intermixed regions of subgenomes in hybrid species
mapping hybrid subgenome genomics sequencing
written by Matteo Schiavinato Matteo Schiavinato
3 votes
1 reply
2.4K views
Tool: all2vcf: a tool to convert non-standard variant outputs (mummer. bcftools isec) to VCF
mummer isec variant bcftools vcf
updated by ayeshatariq78 • ayeshatariq78 • written by Matteo Schiavinato Matteo Schiavinato
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1.3K views
Metaquast largest contig by species identical for most species in the metagenomic assembly
metagenomics species quast contig metaquast
written by Matteo Schiavinato Matteo Schiavinato
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1.1K views
Canu possibly idling in the "meryl" step
canu meryl assembly genomics kmer
written by Matteo Schiavinato Matteo Schiavinato
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1 reply
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Comment: C: How to convert E. coli gene names from biocyc to Ensembl IDs?
written by Matteo Schiavinato Matteo Schiavinato
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3 replies
2.2K views
How to convert E. coli gene names from biocyc to Ensembl IDs?
ensembl biocyc escherichia coli conversion r
updated by Biostar Biostar • written by Matteo Schiavinato Matteo Schiavinato
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1 reply
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Comment: C: Best practices to perform a gene set enrichment analysis (GSEA) with E. coli?
written by Matteo Schiavinato Matteo Schiavinato
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1 reply
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Comment: C: Best practices to perform a gene set enrichment analysis (GSEA) with E. coli?
written by Matteo Schiavinato Matteo Schiavinato
2 votes
0 replies
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Answer: A: how can I the unwanted fasta sequences?
written by Matteo Schiavinato Matteo Schiavinato
0 votes
5 replies
3.7K views
Best practices to perform a gene set enrichment analysis (GSEA) with E. coli?
gsea escherichia coli go terms gene set rna-seq
updated by Biostar Biostar • written by Matteo Schiavinato Matteo Schiavinato
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1 reply
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Comment: C: How I can get all the information of proteins?
written by Matteo Schiavinato Matteo Schiavinato
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Comment: C: Remove part of headers in FASTA file
written by Matteo Schiavinato Matteo Schiavinato
2 votes
1 reply
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Comment: C: DESeq2: "model matrix is not full rank"
written by Matteo Schiavinato Matteo Schiavinato
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1 reply
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Answer: A: DESeq2: "model matrix is not full rank"
written by Matteo Schiavinato Matteo Schiavinato
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0 replies
1.5K views
How to extract genes based on a list of GO terms or their children terms?
goterms gene ontology children match
updated by Biostar Biostar • written by Matteo Schiavinato Matteo Schiavinato
3 votes
2 replies
3.4K views
DESeq2 design suggestions: one combined condition, or two separate conditions?
deseq2 mrnaseq rna-seq r design
updated by swbarnes2 swbarnes2 • written by Matteo Schiavinato Matteo Schiavinato
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