PyDeseq2 - InvalidIndexError
Hey everyone,
im currently trying to use PyDeseq2 on bulk RNA-seq data, but i keep getting this error 
This is my metadata:
And this my counts:
Shouldnt the indices of both tables be the same to correctly match samples with condition ?
Id appreciate any help. Thanks :)
• 985 views
•
link
updated
by
Dunois •
•
written
by
tmanjonas •
•
written
by
tmanjonas •
0 answers
No answers yet.
Log in to answer this question.
You most likely have duplicates somewhere in there in the column that is currently serving as index to (I am guessing) the counts DataFrmae. Take a look at comments on this post for some help: https://stackoverflow.com/q/77251779 .