Minor Allele Frequency Calculation for 23andMe data
I have a 23andMe GWAS summary statistics dataset. Herein, I have been given the frequency of allele A, the frequency of allele B, and Counts of AA, AB, BB genotypes in controls and cases. How can I calculate the MAF or EAF from this information?
• 998 views
•
link
updated
by
barslmn •
•
written
by
Priyatam •
•
written
by
Priyatam •
1 answer
If your data is in VCF format, you can use vcftools freq. You can use the search function to see questions asked and answered before: https://www.biostars.org/post/search/?query=allele+frequency+calculation
Log in to answer this question.
More posts like this
-
Calculating MAF from EAF from a GWAS summary statistics file in R
written by namraahmad173 •
-
For GWAS summary statistics, can I calculate MAF using p valuee, OR and N?
written by YL •
-
MAF in R
written by gosssheen •
-
Calculate minor allele frequencies with effect allele frequencies in GWAS
written by rk •
-
Effect Allele Frequency in base summary statistics for PRSs calculation
written by bigfoot •
-
Effect Allele Frequency (EAF) to Minor Allele Frequency (MAF)
written by bigfoot •
-
How to convert BAF to SNP genotype A/B
written by tiago.paim •
-
How to make genotype from allele data
written by mirzaei86.vahid •
-
simulation of genetic data under several given conditions in R
written by lidonghe111 •
-
How Do I Compute The Proportion Of Cases/Controls For Each Genotype From The Penetrance Function?
written by Rossella •
