Hello,
I have miRNA data from a non-model species (fish) and I am trying to identify the putative gene targets of the differentially expressed miRNAs due to my treatment.
From the literature, a common practice seems to get the overlap between the results of TargetScan, Miranda and RNAhybrid + svm_light. After running the three softwares, I am now trying to understand how to use svm_light. I am not familiar with SVM and I can't seem to find any tutorial or clear explanation on how to use svm_light on RNAhybrid results.
Can anyone either point me in the right direction or explain me how to use svm_light?
Thanks!
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written
by
Lucrezia •
1 answer
It's a great honor to know that you are also doing mirna target gene prediction for non-model organisms. I also use these three software, but the intersection ratio of the prediction results obtained by the three software is particularly low, I don't know why. Is it convenient to ask you a question
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