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Is it necessary to adjust genome to the same strand direction?

Hi

I am learning this fascinating tools and I have a question that the genomes I have maybe have different strand directions since I just use original scaffold software output. So I wonder if it is necessary to put them to a uniform direction?

strand-direction vg

1 answer

What are you using vg for? In general our tools will consider both strands so you shouldn't need to change the direction

I would like to construct a pan-genome using vg, and thank you for your reply :)

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