This is a test version of Biostars. For the public version, visit https://www.biostars.org.
GEOquery getGEO is normalized data or not?

I'm fetching microarray data using GEOquery.

datasets <- c("GSE32676", "GSE43288", "GSE19279", "GSE19280") gset <- getGEO(gse_id, GSEMatrix = TRUE, AnnotGPL = TRUE)

So, when I check the data, It doesn't seem they are normalized but when I check in biostars people say that getGEO fetchs the normalized data.

that is how my data looks like:

enter image description here enter image description here enter image description here enter image description here

getgeo geoquery microarray
• 573 views • link
written by tyasird • tyasird

0 answers

No answers yet.

Log in to answer this question.

More posts like this

No similar posts found.