Changing Cellchat labels or group.by function
Hey everyone, I am new to using cellchat. I noticed looking at the steps using their github page, that to create a cellchat object, one has to identify what groups they would like to infer communication between. So example, according to the tutorial,
createCellChat(object = sce, group.by = "sce.clusters")
Meaning they will be identifying cell-cell communication between the sce.clusters. In my case, i want to identify cell-cell communication for the cell type + oxygen group; so, Bcell + Hypoxia. If i create that combination as a new metadata, i am interested in knowing if it actually reflects in the cell-cell communication or its only changes my "group.by".
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Doublet Detection for Intestinal Immune Cells in scRNA-seq
written by s •
-
Seeking Advice on Pre-processing Single Cell Data for Gene Mapping
written by monklod •
-
cellchat analysis from from a Scanpy h5ad file
written by cgp09741 •
-
How do I project known tSNE coordinates onto SeuratObject
written by samuel.storey •
-
cellchat probelm
written by Andy •
-
Signac findmarkers on multiomic single cellobject
written by Jerry •
-
Cell type identification in scRNAseq
written by aimanbarki •
-
How do I access inflection points in Seurat object?
written by gt •
-
how is seurat computing logcounts?
written by anonym101
-
identification of rare cell population in Sc-RNA sequencing
written by Maria17 •
