Performing Differential Analysis with NarrowPeak Files in ATAC-seq: Tumour vs. Control
Hi everyone,
I’m new to ATAC-seq and working in R with narrowPeak files (BED 6+4) from online sources about a specific cell type. I want to compare it with RNA-seq data. Unfortunately, I don’t have access to the ATAC original RAW data or BAM files.
Is it possible to perform differential analysis (tumour vs. control) with only these narrowPeak files? If not, are there methods I could use to extract useful insights despite this limitation?
Any advice would be much appreciated!
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Assembling a chloroplast genome using only PacBio data (Illumina reads lost)
written by Serena •
-
ATAC seq: from peaks to differential analysis ??
written by Picasa
-
RNA-seq, three comparisons - stick to one linear model, or use separate models?
written by noodlejackson •
-
News: Epigenomics Data Analysis
written by Physalia-courses
-
News: Epigenomics course
written by Physalia-courses
-
Comparing ATAC-seq narrowPeak Files from Chicken and Mouse
written by Rafael Soler •
-
Circos Plot to Visualize Chromatin Accessibility Changes from ATAC-seq Data
written by biology_inform •
-
Bowtie2 alignment help for ATAC-seq
written by mrs.whirly •
-
Comparing RNA-Seq data to online databases
written by Victoria •
-
Experience with whole transcript vs 3' RNA libraries?
written by kiruseq •
